Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0633 ATGCCGAGTCTCAGAATGAGGAACTTCCTGTCCCGTATCAAAACTAGAAGAACAAAGAAAACCATCCGAAGAAACCGAAACAAAAACGCTCACAAACTCAGAAACCAGAGCTGCATTTCTTCCATTACCAACAATTTCCCATCTTTCGTAGAAGAAGAAGATACCGAAGAAGGTTTCAGTATCAAAAGTTCTGCCCCATCACACACCCACGGCGTTCAGCCCTTAGGCAATCTCTATTTCAATCCTGGTTCCATCAATTCCAGAGACACTGGTTTAGGTAATCTTCATACCCTCACTGATGAACTTGTTCTTGACATTCTAGGGTTTTTAGATGGTACCAGCTTAGGGGTTTTGGCTTCTGTTAGCAAATCATTTTATGTTTTCACTAATCATGAACCCCTTTGGAGGAATCTTGTTTTGGAGAATCTTAGTGATGGGTTTCAGTATAATGGGTCATGGAAAACTACTTTTGTTTCTTCTTGTTACCCTTTATTTGATGTTTCGTGTAGTGCTCCTAGGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTGTGTGCTAATCTTGAAATGAAACCTGAATGGTTGGAGAGGGATAATATTGTTCGAAAGAAAGGCATTTCGGTTGAAGAGTTTGTAATGAATTTCGAGGAGGTTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCGTTGAGGAAATGGGATAGAGATTATTTGATGAAGTTATGCGGGGATGATGTTAAGTTTGCAGTTGGGCCTGTGGAGATGAAACTCGGAGAGTATTTTGGATATTCAGATCAAGTTAGAGAAGAACGGGCGCTGTATCTGTTTGATCCAAAATTTGCTGAAAAAGTTCCGACATTGGGTTCTGAATATGAAGTTCCGGTGTATTTTCGGGAGGACTTGTTTAGTGTTTTGGGCAACGAGAGGCCTGACTACAGGTGGATTATTATCGGACCAGCTGGATCTGGATCGTCTTTCCATGTCGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAGGGGTCGAAGAAATGGATACTGTTTCCTCCCGATGTAATTCCGCCCGGTGTTCATCCTAGTCCCGATGGTGCAGAGGTGGCATCTCCTGTTTCGATAATGGAATGGTTCATGAACTTTTACGGTGCAACAAAGAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTCATGTTTGTGCCGAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATTGCCATAACACAAAACTATGTTAGCAGGAGAAATTTGTTAAATGTGTTGAATTTTCTTAAAAGGCCGAACGCTAGCATACTGGTATCTGGAACATCGGATAGAGTGAATTTGCATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATTGATGAACTGACCCGAAAAGAAGAAGAGAAAAAGATCCAGCAAAGGAAACTTTCCATCTGGGATTCTATTGCAGACTCCAGCGTGGGAGCTTTCAAGTTTTCTTTCTAG 1554 0.4112 MPSLRMRNFLSRIKTRRTKKTIRRNRNKNAHKLRNQSCISSITNNFPSFVEEEDTEEGFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLHTLTDELVLDILGFLDGTSLGVLASVSKSFYVFTNHEPLWRNLVLENLSDGFQYNGSWKTTFVSSCYPLFDVSCSAPRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKKGISVEEFVMNFEEVNKPVLLEGCIDNWDALRKWDRDYLMKLCGDDVKFAVGPVEMKLGEYFGYSDQVREERALYLFDPKFAEKVPTLGSEYEVPVYFREDLFSVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIMEWFMNFYGATKNWKKKPIECICKAGEVMFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLNFLKRPNASILVSGTSDRVNLHDKFKNAIEASFPGEIDELTRKEEEKKIQQRKLSIWDSIADSSVGAFKFSF* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0633 517 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 61 515 - -
Psa3g0633 517 SUPERFAMILY F-box domain 90 159 IPR036047 GO:0005515
Psa3g0633 517 SUPERFAMILY Clavaminate synthase-like 207 449 - -
Psa3g0633 517 Gene3D Cupin 139 437 - -
Psa3g0633 517 Gene3D - 87 136 - -
Psa3g0633 517 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 61 515 - -
Psa3g0633 517 SMART cupin_9 283 452 IPR003347 -
Psa3g0633 517 Pfam Cupin-like domain 215 435 IPR041667 -
Psa3g0633 517 Pfam F-box-like 100 140 IPR001810 GO:0005515
Psa3g0633 517 ProSiteProfiles F-box domain profile. 92 138 IPR001810 GO:0005515
Psa3g0633 517 ProSiteProfiles JmjC domain profile. 292 452 IPR003347 -
Psa3g0633 517 SMART fbox_2 98 138 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0633 Psa-Chr3 57091768 57093918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0633 83 441 Glycosyltransferase AT1G78280 36.957 4.97e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa3g0633 Cupin_8 4.1e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0633 - - lja:Lj1g3v4753250.1 870.922