Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0573 ATGGATGGTTCTCCTGCAAACCCTAACCCTTCACACAAACCAAAACAACCGCTTCGACCCTGTGACTATTGCAGCAATTCAACCGCAGTTCTATACTGCAGAGCCGATTCAGCCAAACTCTGTTTCTCTTGCGACCGTGAAGTTCACTCTACGAACCAGCTTTTCTCAAAGCACACGCGCTCCTTAATCTGTGATTCATGCGATGATTCCCCTGCTACTATACTCTGTTCGACGGAATCCTCTGTTTTCTGTCAGAATTGTGATTGGGAGAATCATAATCTCTCGCTTTGTTCTCCGCATGAAAGAAGACCTCTTGAGGGTTTCACTGGGTGTCCTTCGGTTACTGAACTGTTGGCGATTGTTGGGTTGCAGGATATTGGGAAAAAATCGTTGCTTTTTCCTGAAGAAAGTTTTGGGGATGGGTTTCTAGGGTATGAGATTGAAGGGGTTTCTGATATGTTTGTTTGGGATGCTCCTACTTTTGTTAGTCTTGATGATCTTGTTTCTTCTTCTCCTTCTTCTCATAACTATAGTGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTAAGGCCGCTTGTGGGAGACAGAAAGAAGAGATTTTAAGTCAGCTTCGCGAGATGACGAAGTCTGAGCCCTTGGATCAGGAAGATTATATGCCATCAAGGAGTTTGTCTATAGATTTTGAACACGACACTAAGGCTGATATTGTTCCTATAAATGAGTGGCTCAGAGAAAGCAGCGAACCAATTTATCAAGTTGTACCTGTTGATACATCAATCAGAGCTCATACCGAAGAATTTCCAGTTAAACATTCTGTATCTTCTGTCGGGGAGTCTCATACTCACATGACACCTTCAGAATCTATTAAGTCTGAAGCCTTGTCGACTACTTTTAAACCTCTTCCTCCTCCATATGAGTTAGCGAGTCAAGAAAGGGATTCTGCATTGTTACGGTACAAGCAGAAGAAGAAAACAAGAAGATACGACAAGCATATAAGGTATGAATCACGAAAAGTTCGGGCGGAAACCAGAACACGGGTTAAGGGCCGATTTGCTAAGATAGAGCATTGA 1071 0.4323 MDGSPANPNPSHKPKQPLRPCDYCSNSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLCSPHERRPLEGFTGCPSVTELLAIVGLQDIGKKSLLFPEESFGDGFLGYEIEGVSDMFVWDAPTFVSLDDLVSSSPSSHNYSAMEVPPLPKNRKAACGRQKEEILSQLREMTKSEPLDQEDYMPSRSLSIDFEHDTKADIVPINEWLRESSEPIYQVVPVDTSIRAHTEEFPVKHSVSSVGESHTHMTPSESIKSEALSTTFKPLPPPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAETRTRVKGRFAKIEH* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0573 356 MobiDBLite consensus disorder prediction 274 293 - -
Psa3g0573 356 CDD Bbox1_BBX-like 20 63 - -
Psa3g0573 356 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 16 356 - -
Psa3g0573 356 CDD Bbox1_BBX-like 63 105 - -
Psa3g0573 356 ProSiteProfiles Zinc finger B-box type profile. 59 105 IPR000315 GO:0008270
Psa3g0573 356 Pfam CCT motif 312 353 IPR010402 GO:0005515
Psa3g0573 356 MobiDBLite consensus disorder prediction 272 293 - -
Psa3g0573 356 Pfam B-box zinc finger 62 105 IPR000315 GO:0008270
Psa3g0573 356 Pfam B-box zinc finger 18 61 IPR000315 GO:0008270
Psa3g0573 356 ProSiteProfiles CCT domain profile. 312 354 IPR010402 GO:0005515
Psa3g0573 356 SMART bboxneu5 16 63 IPR000315 GO:0008270
Psa3g0573 356 SMART bboxneu5 64 105 IPR000315 GO:0008270
Psa3g0573 356 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 16 356 - -
Psa3g0573 356 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0573 Psa-Chr3 52122308 52125247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0573 19 327 C2C2-CO-like Transcription Factor Family AT2G47890 41.509 9.96e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa3g0573 zf-B_box 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0573 - - mtr:MTR_7g108150 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0573 3 52122308 52125247 Psa3g0573 3 52122308 52125247 ECH