Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0566 GAGCCGGAATTTTGGCAAGATCTCGAAGGGCTGTTTTGTTGGATATTAAGTGGGCATGCCTAGAATCTTTGCTGTCAATTCCTTCTCATGCTCTCAAAAATGGGATTCATTTGGAGGAAAACTACACTTTCTTCTCAGATGACACTCTGAGATGCATTTTTGGTGATCTTGTTGAGAGCCTTGAAAATGCGGGAGAAAGTTCTGTTTTATCCATGCTGAGATCACTCAGAATGTTATTTGAGCTAGTTGCCAAAGTGACACCAAGTGCGGTTGTTTCCTGTAGTCATGTGATAGATGCACAGGTTATTTGGAATTTGGTGCATTCATCTTGGATATTACATATAAATTACAACAAGCGAAGAGTTGCTTCGATTGCTGCTCTTTTGTCATCTGTTTTACATCCTTTATTATTTAATGATGAGAGCATGCATCAAAGAGACAATGCACCAGGGCCACTGAAATGGTTTATTGAAAATCTTATTGAGGAAGGCAGAAAGAGTCCTCGGACAATTCGACTTGCAGCGTTGCACTTAACAGGGTTATGGCTCTTAAATCCTATAATTATAAAGTTTTATTTGAAAGAGCTTAAACTGCTCTCCCTATACGGTTCAGTTGCATTTGATGAGGATTTTGAAGAGTTGTATGCACGTGTATCGGTTGCTGTTCTGTTTTACAAGTTGGCAGACTTGGCCTGTATGGTGGGATCACCAAATGAAGACGTAGATTGTATGGCAGCATTAGATTCTGGCAGATCATTTCTGCTAGAGCTTCTTGACTCTGCGGTCAATGATAAAGATCTCGCTAAGGAGTTATACAAAAAATATAGTTCTATTCATAGGCACTGTCCCTCGGGCAATTGGCTAATTCCCAAATGTTGCATCACTATGAGTTGGAAAATAATAAAACACTGCATGAAAATCAGCTTGTTAATTCTCAAGAACACTATGGACTTGTCAATGCTAACATCATACCCAGCTATGAGATATCTTCAAGCCGCAGCTGGACACAGAAGTATGCCATGGGATGCTCATTTGGCTAGGTTTCAAATTTTGCAATTTAGGGACAGGCTGGAAACATTGTTTGGAATAAACATGGGCAGATTTTTTGTGCAGGAATACAACAAATTCTATATTATACCTATTAATGAGGCTGCTGTTATTATACAGAAACAGAAAAAAATTGTGTTTGAAAGAGACAAAATTCAGACGGTTAAAGATGCTACAATTGTCATACAATCAGTCATTCGTGAACGGTTGTTTCTTGTTGCCGCTCGTCCTGGAATTGTTCCGATGCATAAGGTCCCAATTTATGATGCAAGAGTGGATCGATTTCCTCCAAGGCTCACTGCATTAAATTGCAAGCCCACTGTTGTAACTTTTCAAGCATACACAAAAGATCAGATCCTTAAGATTCTTAAAGAAAGGTTAAATGAACTTCCTTACATAGTCTTCCAACATCAAGCATTAGAACTATGCGCCAGGAAAGTTGATGCAGCTTCTGGAGATATGCGAAATGCTCTTTCCATATGCAGGAGTGCAATTGAGATGTTAGAAGCAGAAATTAGAGACTCTGTTTCCAATGTGAATGCTTCAGAAGAGAAATCATCATCAGAATAA 1616 0.3899 AGILARSRRAVLLDIKWACLESLLSIPSHALKNGIHLEENYTFFSDDTLRCIFGDLVESLENAGESSVLSMLRSLRMLFELVAKVTPSAVVSCSHVIDAQVIWNLVHSSWILHINYNKRRVASIAALLSSVLHPLLFNDESMHQRDNAPGPLKWFIENLIEEGRKSPRTIRLAALHLTGLWLLNPIIIKFYLKELKLLSLYGSVAFDEDFEELYARVSVAVLFYKLADLACMVGSPNEDVDCMAALDSGRSFLLELLDSAVNDKDLAKELYKKYSSIHRHCPSGNWLIPKCCITMSWKIIKHCMKISLLILKNTMDLSMLTSYPAMRYLQAAAGHRSMPWDAHLARFQILQFRDRLETLFGINMGRFFVQEYNKFYIIPINEAAVIIQKQKKIVFERDKIQTVKDATIVIQSVIRERLFLVAARPGIVPMHKVPIYDARVDRFPPRLTALNCKPTVVTFQAYTKDQILKILKERLNELPYIVFQHQALELCARKVDAASGDMRNALSICRSAIEMLEAEIRDSVSNVNASEEKSSSE* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0566 537 Gene3D - 447 537 - -
Psa3g0566 537 PANTHER RNA METHYLTRANSFERASE 10 279 IPR045330 -
Psa3g0566 537 Coils Coil 513 533 - -
Psa3g0566 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 524 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0566 Psa-Chr3 50927897 50930410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0566 441 524 Core DNA Replication Machinery Family AT2G29680 67.857 9.36e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0566 K15333 - gmx:100809637 438.728