Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0551 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGTGAAGAACAGGTGCAGAATAATCTCAACGATTCAAGTTCAGGACCATCTGGTGCTTCTAATAGCAATGGTTCCAGTAATCAACAACAAACCAAGAAGAAAAGAAATCTTCCTGGAACACCAGATCCTAGTGCTGAAGTTGTAGCTTTATCACCAACAACATTAATGGCAACAAATAGATTTGTATGTGAGATATGCAACAAAGGCTTCCAAAGAGACCAAAATCTTCAGTTACATCGCCGAGGTCACAATCTTCCATGGAAACTTAGGCAGAGAACAAGCACAGAAGTGAAGAAAAAGGTGTATGTGTGTCCCGAATCATCATGTGTCCATCATAACCCAGCTCGCGCGTTAGGCGACCTTACAGGTATCAAAAAACATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAAAGATACGCTGTTCAATCTGATTGGAAAGCTCACCAGAAAACTTGTGGCACAAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGACAGTTTTATAACTCATAGAGCATTCTGTGACGCATTAACAGAAGAAAACCACAGAGTGAACCAAGGATTAACTAGTGGCATGCCACCAAATTTACAGAATCAAATGCATGATCCTATCTCTACAATGCCACTGAAAACTATTTCCAACATTTCATCGGAATTAATCAACGACTCGCTAAAATCGCCAACTCAAGAACATGTTCCAATACAATTCAGATCAACCAATGCATGTGGTGGCATGTTTTCAACAAGTGCAGGTGCACTTTTCGGTGGTCCGAAAACCTTACCTCCCTCTTCTTCATCTCTTCAACTCAGTTCAAGTTCCAATAGCTTCAACTACTTCAGCGATAACAAAATCGGAGGACTAATTTCTGGCTCGGTTCAAATGTCGGCTACGGCTTTGTTACAAAAAGCAGCACAGATGGGTGCTACTGCAAGCAATAGTGTTAACTCTTCCATGATGCAGAAAAGCTTTGTTAGTAGTATGATTAGTCCTAATCATGATCATGTTTCTGGTTCCACCATGATGCAGCATAACCAAAACCAAAACCAAAACCAACCCTCTTATGAACAATTTAATCCACTACTACACCACAATGATTTATCTAACATGGCTGGTGTTAGTGGTGGTGGAGCATTTACCAACCAATTGTTTCAAAAAGAACAGCAAGAAATTTCATTAATGTTTGATAATAATGCTAATGACATGGGAATGTTTGGCCAAGGATTGATGAAAAATGTGGCACAAGAGGTTAGTGATTGTTCAAATTTGATCCATGGAAGTGACGTGGCAAGAGTGCATGATTTCTTGGGAATTGGAGGTTCAAATTCAGGTCTGCATGAACCACAACAACATAGGATGGAAATTATGAATGATTTTCATCACCATCATCATCTTCCACATGAGGATTCACCTATGGAGAAATCAATTTGGGATGATTGA 1518 0.3966 MSNISGDEGSFSSGNNGEEQVQNNLNDSSSGPSGASNSNGSSNQQQTKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKKVYVCPESSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENHRVNQGLTSGMPPNLQNQMHDPISTMPLKTISNISSELINDSLKSPTQEHVPIQFRSTNACGGMFSTSAGALFGGPKTLPPSSSSLQLSSSSNSFNYFSDNKIGGLISGSVQMSATALLQKAAQMGATASNSVNSSMMQKSFVSSMISPNHDHVSGSTMMQHNQNQNQNQPSYEQFNPLLHHNDLSNMAGVSGGGAFTNQLFQKEQQEISLMFDNNANDMGMFGQGLMKNVAQEVSDCSNLIHGSDVARVHDFLGIGGSNSGLHEPQQHRMEIMNDFHHHHHLPHEDSPMEKSIWDD* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0551 505 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 483 - -
Psa3g0551 505 Gene3D Classic Zinc Finger 110 201 - -
Psa3g0551 505 MobiDBLite consensus disorder prediction 1 53 - -
Psa3g0551 505 MobiDBLite consensus disorder prediction 1 59 - -
Psa3g0551 505 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Psa3g0551 505 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Psa3g0551 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Psa3g0551 505 SMART c2h2final6 118 148 IPR013087 -
Psa3g0551 505 SMART c2h2final6 153 173 IPR013087 -
Psa3g0551 505 SMART c2h2final6 77 99 IPR013087 -
Psa3g0551 505 Gene3D Classic Zinc Finger 73 100 - -
Psa3g0551 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 483 - -
Psa3g0551 505 SUPERFAMILY beta-beta-alpha zinc fingers 76 174 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0551 Psa-Chr3 50325376 50327934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0551 27 338 IDZ Gene Family AT3G50700 53.623 2.90e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g0551 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0551 - - cam:101505978 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0551 3 50325376 50327934 Psa3g0551 3 50325376 50327934 ECH