Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0521 ATGAGTAGACGTTCGAGCAGAACCGTCTATGTTGGGAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTCATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCGCCGAGGCCCCCTGGCTATGCATTTGTAGAGTTTGATGATGCTCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGTTATGATTTTGACGGGCATCGGTTACGGGTGGAGGCTGCTCATGGTGGCCGTGGTACTGGTAATTCATCTTCAAGAGATCGACATAGTAGTCAAAGCAATGGCAGGGGTGGACGTGGAGTATCCAGACGCTCTGAATATCGTGTTCTAGTCAGTGGATTGCCATCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCCGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACTACTGGAATTGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAAAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGTCTTATGTTCGCGTGAGGGAATATGATTCGAGGCGGGACTCTAGAAGTCCTAGTCGTGGTCCATCTCATTCTAGAGGAAGAAGCTACAGCCGCAGCCGTAGCCGTAGTCGTAGCGACAGTCCTGTGCGAAGCCAAAGCAAATCTCCCAAGGGTAAATCCTCACAACGATCACCTGCTAAATCTCCAGCCAGATCGGTTTCTCGTTCTCGTTCAAGATCTAGGTCCCGTTCTTTATCAGGATCACGGTCAAGGTCAAGGTCTCCATTACCTCTGCGTAACAAAAGCCCCATAAAGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAAGAGTCCAAGTAGGAGCCGCAGCAAAAGTTTATCCAGGTGA 909 0.4796 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFDDAQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRHSSQSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPSRGPSHSRGRSYSRSRSRSRSDSPVRSQSKSPKGKSSQRSPAKSPARSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPIKRSASRSPSRSKSPSRSRSKSLSR* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0521 302 MobiDBLite consensus disorder prediction 84 105 - -
Psa3g0521 302 MobiDBLite consensus disorder prediction 81 110 - -
Psa3g0521 302 MobiDBLite consensus disorder prediction 278 302 - -
Psa3g0521 302 CDD RRM2_SF2_plant_like 113 188 - -
Psa3g0521 302 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 288 - -
Psa3g0521 302 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 288 - -
Psa3g0521 302 Gene3D - 2 112 IPR012677 -
Psa3g0521 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Psa3g0521 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Psa3g0521 302 Gene3D - 113 190 IPR012677 -
Psa3g0521 302 SMART rrm1_1 8 78 IPR000504 GO:0003723
Psa3g0521 302 SMART rrm1_1 114 185 IPR000504 GO:0003723
Psa3g0521 302 MobiDBLite consensus disorder prediction 222 247 - -
Psa3g0521 302 MobiDBLite consensus disorder prediction 186 302 - -
Psa3g0521 302 MobiDBLite consensus disorder prediction 186 201 - -
Psa3g0521 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Psa3g0521 302 CDD RRM1_SF2_plant_like 8 78 - -
Psa3g0521 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Psa3g0521 302 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0521 Psa-Chr3 49001723 49005859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0521 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.61e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0521 K12890 - gmx:100796900 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0521 3 49001723 49005859 Psa3g0521 3 49001723 49005859 ECH