Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0503 ATGGTTTCGCTCAAACTCCAAAAGCGTCTCGCCGCCAGTGTCCTCAAGTGCGGAAGGGGAAAAGTCTGGCTCGATCCAAATGAGGGAAACGATATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCACTCCAGATCACGTGCTCGTCGGATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCTAGGCTTCCAACCAAGATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGTTTGCTCCGCAAGTACCGTGAATCTAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTGTTCAAGAATAAGAGAGTTCTAATGGAGAGCATCCACAAGTCTAAAGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCCAAGCGTGCCAAGAACAAGGCCAGCCGAGAAAGGAAGTTTGCTCGGAGGGAGGAACGTTTTGCTCAAGGTCCTGGAGGAGCAGAGAAACCAGTAGCAGCTCCTACTGCTGCTCCACCAGCCGAAGCAGCAAAGCAAACCCAACCATCAAAGAAATCCAAGAAGGCAGTGGCAGCTTGA 660 0.4909 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGGAEKPVAAPTAAPPAEAAKQTQPSKKSKKAVAA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0503 219 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Psa3g0503 219 MobiDBLite consensus disorder prediction 144 219 - -
Psa3g0503 219 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Psa3g0503 219 PANTHER RIBOSOMAL PROTEIN L19 1 215 - -
Psa3g0503 219 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Psa3g0503 219 PANTHER 60S RIBOSOMAL PROTEIN L19 1 215 IPR039547 GO:0003723|GO:0003735|GO:0022625
Psa3g0503 219 MobiDBLite consensus disorder prediction 57 79 - -
Psa3g0503 219 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Psa3g0503 219 Gene3D - 57 185 - -
Psa3g0503 219 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Psa3g0503 219 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Psa3g0503 219 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Psa3g0503 219 MobiDBLite consensus disorder prediction 144 184 - -
Psa3g0503 219 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0503 Psa-Chr3 47543071 47545243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0503 1 199 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 88.442 1.30e-128 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0503 K02885 - tcc:18613620 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0503 3 47543071 47545243 Psa3g0503 3 47543071 47545243 ECH