Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0496 ATGGCAACGAGAAACCGAACTGTAGAGTTCAGAAAGTACAGAGACACCGTCAAAAGCTTACGAACTCCTCTTTCTTCGTCAGCTTCCGCTTCTTCCGGTGGTCCTGTCATTGAAATGGTTAACACTTCGCTTCTTCGTTCCAGTAACCGATCTTCGTATACTCCTCTCAGTACCCAAGACCCAGGTCCATCTTCCTCTAGTGATGCGTTTACTGTGGGTTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATAGCTACGAATATACAACGTGCAAAGGTTAAAATGTCGGAGTTAACTAAAGCTCATGCGAAGGCTTTAATGCCCTCGTTTGGTGATGGTAAAGACGATCAGCGTCAGATTGAGACGCTATCGCGGGAAATTACAGCTCTCCTCAGAAAGTCTGAAGTGAGGCTGAAAAAGCTTTCTGCTGGTAGAGGATCTTCTGAGGAATCTAATGTCAGAAAAAATGTGCAGCGTTCACTTGCTACAGACCTTCAGAACCTGTCAATGGACCTCCGGCGGAAGCAGTCAGCATATTTGAAACGGTTGCAGAAACAACAAGAGGGTTATGATGGGATTGACTTGGAGATTAACTTTAATGGGAGTAAATCTCGATTGCAGGATGATGGATTCGATGATGTGGGTTTTAGTGAAGCACAAATGACAAAGCTAAAGAAAAATGAGCACATATCAGCGGAAAGAGAAAGAGAAATTGATCAGGTCGCTAGTTCAGTCCACGAACTTGCTCAGATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTAGATAGAATCGACTACAACATTCAGAGTGTTGCTACGACTGTTGAGGAGGGCTTTAAGCAGTTGCAAAAGGCGGAAAGAACACAGAAAAAAGGAGGGATGATTACATGTGCAACGGTCCTTGTTATCATGTGCTTTGTCATGCTAGTTCTGTTGATAATCAAGGAGATAATCTTCTAG 978 0.4387 MATRNRTVEFRKYRDTVKSLRTPLSSSASASSGGPVIEMVNTSLLRSSNRSSYTPLSTQDPGPSSSSDAFTVGLPPSWVDDSEEIATNIQRAKVKMSELTKAHAKALMPSFGDGKDDQRQIETLSREITALLRKSEVRLKKLSAGRGSSEESNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQKQQEGYDGIDLEINFNGSKSRLQDDGFDDVGFSEAQMTKLKKNEHISAEREREIDQVASSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGFKQLQKAERTQKKGGMITCATVLVIMCFVMLVLLIIKEIIF* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0496 325 PANTHER SYNTAXIN 1 320 IPR045242 -
Psa3g0496 325 SUPERFAMILY t-snare proteins 74 284 IPR010989 GO:0016020|GO:0016192
Psa3g0496 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa3g0496 325 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 320 - -
Psa3g0496 325 Pfam SNARE domain 265 317 IPR000727 -
Psa3g0496 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Psa3g0496 325 SMART tSNARE_6 224 291 IPR000727 -
Psa3g0496 325 Gene3D - 75 283 - -
Psa3g0496 325 CDD SNARE_syntaxin16 233 290 - -
Psa3g0496 325 MobiDBLite consensus disorder prediction 48 68 - -
Psa3g0496 325 SMART SynN_4 69 185 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0496 Psa-Chr3 47132390 47137145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0496 1 325 SNARE and Associated Proteins AT4G02195 67.791 8.25e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0496 K08489 - gmx:100803629 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0496 3 47132390 47137145 Psa3g0496 3 47132390 47137145 ECH