Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0493 ATGAAGTTCTGCAAAAAATACCAGCAATACATGCAAGGCCAGGAGAACAAGAAGCTTCCTGAAGTTGGATTCAAGAAGCTCAAGAAGATCTTGAAGAAGTGCCGTAGAGATCATTCTCATTCTCATTCTCATTCTGAATCCCAATCCCATAAAGCATCTCAAACCTGTCCCAACCAGTGCTCAGTGTGTGATGGAACGTTCTTCCCTTCGCTTCTCAGTGAAATGTCTGAGATAGTTGGATGCTTTAATCAACGTGCACAGAAATTGCTTGAGCTCCATCTTGCTTCTGGTTTCAGAAAGTATCTTTTATGGTTCAAAGGGAAATTTCATAAGAATCACACTGCTCTTATTCAAGAAGGTGAAGATCTTGTTACTTATGCACTCATCAACGCCACCGCAATTCGAAAAATTCTAAAGAAATATGATAAGGTTCATTATTCGAAACAAGGTCAATTGTTTAAGTCACAAGTACAAAGTATGCATAAGGAAATTCTTCAAAGTCCATGGCTTTGTGAACTCATGGCTTTTCACATCAATTTGAGAGAAACTAAGGTGGATTCAAGGAAGGAAACAGCTTTGTTTGATGAATGTTCTCTAACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTTTTTGATTCTGTCAAAATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGTCATATATTCTGTTACATCTGTGCTTGCTCGGCTGCATCGGTGTCGATTGTCGATGGACTTAAGGCCGCGAATCCTAAAGAAAAATGTCCTCTATGCCGCGAGCGTGCGGCTTATGAAGGTGCTGTGCATTTGGAAGAACTAAACATTCTGTTAGGCCGAAGCTGCCAGGAATACTGGGAACAAAGGCTGCAATCTGAGAGGGTAGAAAGGATTAAGCAAATAAAGGCACACTGGGATTCACAGTGTAGAGCTTTTATGGGCGTTTGA 987 0.4043 MKFCKKYQQYMQGQENKKLPEVGFKKLKKILKKCRRDHSHSHSHSESQSHKASQTCPNQCSVCDGTFFPSLLSEMSEIVGCFNQRAQKLLELHLASGFRKYLLWFKGKFHKNHTALIQEGEDLVTYALINATAIRKILKKYDKVHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVDSRKETALFDECSLTFKDGKPSLTCELFDSVKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAANPKEKCPLCRERAAYEGAVHLEELNILLGRSCQEYWEQRLQSERVERIKQIKAHWDSQCRAFMGV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0493 328 Pfam Zinc finger, C3HC4 type (RING finger) 221 275 - -
Psa3g0493 328 SMART ring_2 224 272 IPR001841 -
Psa3g0493 328 ProSiteProfiles SPX domain profile. 1 155 IPR004331 -
Psa3g0493 328 ProSitePatterns Zinc finger RING-type signature. 239 248 IPR017907 -
Psa3g0493 328 ProSiteProfiles Zinc finger RING-type profile. 224 273 IPR001841 -
Psa3g0493 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 328 - -
Psa3g0493 328 SUPERFAMILY RING/U-box 217 278 - -
Psa3g0493 328 CDD SPX_BAH1-like 2 151 - -
Psa3g0493 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 326 IPR013083 -
Psa3g0493 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 328 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0493 Psa-Chr3 47030300 47032256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0493 221 273 C3H Transcription Factor Family AT4G28270 41.379 8.92e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0493 K16275 - gmx:100787904 563.148