Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0483 ATGGAGAAGGTTCTTGGAGGATTGCTTAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAACTATTTGAGAGATGATCTGAAAAGAGGAAATATTTCTGCTGAAGAGGAAACTCTCATTGTCAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATTGCAAGTCATTTATCAGGAAGAACAGACAATGAGATTAAAAACTACTGGAACTCTCATTTGAGTCGAAAAATTTACACTTTCCGAGGAACCACAACAAATTACAATAATAATATTAAAGAGATTCCTTCACAAGGAATCTTAGTTAATATACCTCCGAAAAGAAAAGGTGGTAGAATTAGCAGGAATGCTATGAAGAAAAATAAACCCTATACCCAAAGAGTTTTTGAAAGCGCAAATTGGCTTTCTTCTACCGGTGAAGATACCCCAAATGGGCTTCAGTTGCCATGCATTGTCGGTGAAAATATTGAAACTGATCAAAATCCAAATCCGAAGGTTATTAATGACGATGATTTGTTGAATTTAAATGATATTATTATAGACACATGCGAGGTGGAAAAAGAAAGAGACAGTAATGATGATGAAGGAGTTCGGGACAAAACACATGACACTACATGTCGAAGTTCGAATGATTTGGATTGGGATAGTGTTGTGCCTTTGTTGAATAATAAAGGACAATCTTTGTCATGGGAGTTAACTTGGTTGTGGGATGATGATGAATGGGAGAAGGATTTTCACAAAGTATACTGA 750 0.36 MEKVLGGLLRCGKSCRLRWINYLRDDLKRGNISAEEETLIVKLHASFGNRWSLIASHLSGRTDNEIKNYWNSHLSRKIYTFRGTTTNYNNNIKEIPSQGILVNIPPKRKGGRISRNAMKKNKPYTQRVFESANWLSSTGEDTPNGLQLPCIVGENIETDQNPNPKVINDDDLLNLNDIIIDTCEVEKERDSNDDEGVRDKTHDTTCRSSNDLDWDSVVPLLNNKGQSLSWELTWLWDDDEWEKDFHKVY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0483 249 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Psa3g0483 249 CDD SANT 33 74 IPR001005 -
Psa3g0483 249 SUPERFAMILY Homeodomain-like 10 80 IPR009057 -
Psa3g0483 249 SMART sant 28 76 IPR001005 -
Psa3g0483 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Psa3g0483 249 Gene3D - 2 28 - -
Psa3g0483 249 Gene3D - 33 78 - -
Psa3g0483 249 PANTHER - 7 207 - -
Psa3g0483 249 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Psa3g0483 249 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0483 Psa-Chr3 45351261 45355676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0483 6 119 MYB Transcription Factor Family AT2G47460 62.931 1.09e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa3g0483 Myb_DNA-binding 3.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0483 K09422 - gmx:100814275 192.971