Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0469 ATGGGAGAAATCGTGTTACTAGTCGATGATTTGAAGCTACTTTCAGGAATTTCTCGCTGTAGAATTTGCCATGAAGAAGAGTTTGAAAGCACCAAAACCTTGGAAGCACCTTGTTCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAACGAAAAAGGAAATACAACTTGTGAGATATGTCTCCAGCAATATGAACCTGGATATACGACTCTTCCAAAGAAGTCAGAGATAAACGATGAAGCAATGTCCATAAGGGTAGAGGAAGAAGCTTCAGACGCAAGAGAAAATAGGGTGGAAGGAACTGTAATAGAAAGTGATTATTCAGAATGCAGCTCTACCGCAGATAGAAGTGCGACTCACTGTCGATCACTTGCAATAGCTTTTACACTTGTGTTACTGGTAAGACATTGTCTCGTAGTCCCTACAAGTGGAGCTGAAGATTACCCATTTACACCTCTTACCGTCATTGTATTGAAGGCTCTTGGAATTATTATACCCATGTACATAGTTACAAAGACAATTGGAGCCATTCAGAATACTATTCGGCACTATCGTGGTTCTGACTATGACACATCTCTTTCTGAGGAAAATGACAGAAATGATGCAACTCACCAAGAAAACTTAATACATTCATAG 657 0.3957 MGEIVLLVDDLKLLSGISRCRICHEEEFESTKTLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTTLPKKSEINDEAMSIRVEEEASDARENRVEGTVIESDYSECSSTADRSATHCRSLAIAFTLVLLVRHCLVVPTSGAEDYPFTPLTVIVLKALGIIIPMYIVTKTIGAIQNTIRHYRGSDYDTSLSEENDRNDATHQENLIHS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0469 218 MobiDBLite consensus disorder prediction 197 218 - -
Psa3g0469 218 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Psa3g0469 218 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Psa3g0469 218 CDD RING_CH-C4HC3_MARCH 20 67 - -
Psa3g0469 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Psa3g0469 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 206 IPR033275 -
Psa3g0469 218 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 206 - -
Psa3g0469 218 SMART ringv_2 19 68 IPR011016 GO:0008270
Psa3g0469 218 SUPERFAMILY RING/U-box 19 72 - -
Psa3g0469 218 Pfam Protein of unknown function (DUF3675) 73 181 IPR022143 -
Psa3g0469 218 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0469 Psa-Chr3 44521868 44523642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0469 20 67 C3H Transcription Factor Family AT2G37950 44.898 7.78e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0469 - - mtr:MTR_7g109460 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0469 3 44521868 44523642 Psa3g0469 3 44521868 44523642 ECH
Psa3g0469 3 44521868 44523642 Psa6g3712 6 323718632 323720281 PCT