Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0467 ATGAACACCAAAGGCGTCGATTTTGCCTCAGACAAAGTTCTAGCGAGTCGGTTTCTTTCCGAATTCGCAGACGCTAATGGCGAAGCCAAGTACATCAACATCCTGCAAGATGTTGCGAACCACAAAACTCGATCTGTTGAAATTGATCTCGACGACTTAATGAACTACAAGGATCTAGATGAGGAATTTCTGACGCGAGTTACTGAGAATACTCGAAGATATGTAGGGATTTTTGCTGATGCCATTGATGAGCTCATGCCGGAGCCTACTGAGGCGTTTATTGATGATGACCATGACATTTTGATGACTCAGAGGTCTGATGAAGGAACTGAAGGTGCTGATGGGTCTGACCCGCACCAGAAGATGCCTTCTGAAATCAAACGCTTTTTTGAAGTTTATGTTAAAGCATCTTCCAAAGGACGGCCTTTTACAATTAGGGAGGTGAAAGCTTCAAACATTGGCCAGCTTGTAAGATTAGCTGGTATAGTCACTCGATGCTCTGATGTCAAACCATTGATGCAGGTTGCTGTGTACACCTGTGAGGATTGTGGCTTTGAAATTTACCAGGAAGTAACAGCTAGAATATTCATGCCCTTGTTTGAGTGTCCATCAAGGCGTTGTGTCATGAACAAGAGCAAGGGTAATGTCATCCTTCAACTGAGAGCGTCAAAGTTTTTGAGATTTCAAGAGGCAAAAATTCAAGAGTTAGCTGAACATGTTCCAAAGGGTCATATTCCACGAACAATGACCGTTCATCTTAGGGGAGAACTCACTAGAAAGGTAGCTCCTGGTGATGTTGTTGAACTATCTGGGATTTTTCTTCCTATACCTTATGTTGGTTTTAGAGCAATGCGTGCTGGCCTTGTTGCTGACACATACTTAGAGGCCATGTCTGTTTCTCATTTTAAGAAAAAATATGAAGAATATGAACTTAGAGGAGATGAGGAAGAGCAGATCAAACGTTTAGCAGAAGACGGTGATATCTATGATAAGTTGGCAAGGTCACTAGCTCCTGAAATTTTTGGACATGAAGATATTAAGAAAGCACTGCTGCTGCTTCTTGTTGGGGCACCCCACCGGCAATTGAAAGATGGAATGAAGATTAGAGGAGATCTACATATATGTTTGATGGGGGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAATGTAGCACCCAGGGGTGTATACACCACTGGAAAAGGAAGTAGTGGAGTTGGACTAACTGCTGCTGTTCAGAAAGATCCAGTGACAAATGAGATGGTTTTGGAGGGTGGAGCATTGGTGTTATCAGATATGGGCATATGTGCCATTGATGAATTTGACAAGATGGATGAATCTGATCGTACATCTATACATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGGATCACTACATCACTGAATGCAAGGACTGCTGTCCTTGCTGCAGCTAATCCTGCATGGGGAAGATATGATCTAAGAAGAACTCCTGCTGAAAATATTAATCTTCCACCTGCCCTCCTATCAAGGTTTGATTTACTGTGGTTAATTCTAGATCGAGCTGATATGGATAACGATCTTGAAATGGCAAGGCATGTTGTCTATGTCCACCAAAACAAAGAGTCTCCCGCACTAGGATTCACTCCTCTTGAACCATCTGTTCTACGTGCTTACATATCAACTGCTAGAAGATTGTCTCCTACTGTCCCAAGGGAACTGGAAGAGTATATTGCCAGTGCTTACTCCAGCATTCGTCAAGAAGAAGCTAAATCCACCACTCCACATTCCTATACGACTGTCAGAACATTGCTCAGCATTCTCCGCATATCAGCTGCCCTAGCAAGACTACGTTTTGCTGAAACTGTTGCTCAGAGTGACGTGGATGAGGCATTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCTGATGACCGACAAAGGTCTGGTCTGGATGCTATATCCGATATTTACTCGATACTTCGTGATGAAGCTGCTAGAAGTCACAAAATGGATGTCAACTATCGCGATGCTTTGAATTGGATATCTCGGAAGGGGTACAGCGAAGCCCAGTTGAAAGAGTGTTTAGAGGAGTATGCAGCATTGAATGTTTGGCAGATACATCCTCAAACCTTTGATATAAAATTTATCGATGCTTGA 2163 0.4276 MNTKGVDFASDKVLASRFLSEFADANGEAKYINILQDVANHKTRSVEIDLDDLMNYKDLDEEFLTRVTENTRRYVGIFADAIDELMPEPTEAFIDDDHDILMTQRSDEGTEGADGSDPHQKMPSEIKRFFEVYVKASSKGRPFTIREVKASNIGQLVRLAGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARIFMPLFECPSRRCVMNKSKGNVILQLRASKFLRFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYVGFRAMRAGLVADTYLEAMSVSHFKKKYEEYELRGDEEEQIKRLAEDGDIYDKLARSLAPEIFGHEDIKKALLLLLVGAPHRQLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLSDMGICAIDEFDKMDESDRTSIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISTARRLSPTVPRELEEYIASAYSSIRQEEAKSTTPHSYTTVRTLLSILRISAALARLRFAETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSHKMDVNYRDALNWISRKGYSEAQLKECLEEYAALNVWQIHPQTFDIKFIDA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0467 720 Pfam MCM N-terminal domain 17 134 IPR027925 -
Psa3g0467 720 Pfam MCM AAA-lid domain 555 638 IPR041562 -
Psa3g0467 720 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 SUPERFAMILY Nucleic acid-binding proteins 17 296 IPR012340 -
Psa3g0467 720 Pfam MCM OB domain 145 275 IPR033762 -
Psa3g0467 720 Gene3D - 313 645 IPR027417 -
Psa3g0467 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 646 IPR027417 -
Psa3g0467 720 SMART mcm 141 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 CDD MCM7 331 638 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Psa3g0467 720 Gene3D - 145 273 IPR012340 -
Psa3g0467 720 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Psa3g0467 720 Gene3D - 172 226 - -
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 122 134 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 160 171 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 178 189 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 195 207 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 287 297 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Psa3g0467 720 Gene3D - 12 102 - -
Psa3g0467 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 38 698 IPR031327 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 38 698 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g0467 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0467 Psa-Chr3 44417356 44423072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0467 4 718 Core DNA Replication Machinery Family AT4G02060 83.916 0.0 1265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0467 K02210 - qsu:112007744 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0467 3 44417356 44423072 Psa3g0467 3 44417356 44423072 ECH