Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0465 ATGGCCTCGATTGCCATCGACCGTGCCTTTGAATCTCAAGAAAAACATGGAGGGGGAGAAACAAACACTCGTCAAACTTTGGAGAACAACATAGATCTGATAAAAACGCAAATCCAAAAAGATCGAGTCAAATCTATTCAAATTGCTAGGAATGGGAAGTATATTCAATCCCAGGTTTCGAATGCCATGTTAAAAATATCAAGAAATAAATCATTGCAAACTGAACAAAATAATTTTCAAAAGCTTTCTTCAAAAATGGATCATCCTATGTGCAAGTTCAATGGCTCAGTCACTCAAGTTTTGGAAGAAGATGACAATATCTACACTCTAGATGCACCATCTGTGGAAAGTGTCAAGATCCCATACATCAATAGATTGCCAACAAATACAGTTTGGATCCCTTTATCCAGAAATGAAAAAATGACGGAAGAAGACTCGAGTGCTAGAAGAAAAAATGTATTTTATGATCATCGTAAAGGTAAAACAATAGTATCCAGTGATAATGAAGAATTAGAAGAGGATGAGGAAGCTAAACACAACTTTTCAGAAGGTGAAGACAAATTTTTGAGGATGGTATTTGAAGAATATGGTTTAGCTGATGAAGAGGTGTTGAGTATTGTTAGCGAAGTAATCGGGTGCCCGAGTTCTGAAATTCAGGAGAGGTATAAAGTTATCGAGGAAAGTGACCAAAATTCTAGGTATCATGGAGAAAGTGAATCTGACATTGAGACATTTTTGAACCAAAGTTTGAGTGAAACTTTAGAGGCTTTCGACCCTCTTTTTTGTCGTAAATGCATGATTTTTAATTGTTCTTTGCACGGAAACTCTCAAAAGATAATATATCCTAGGAAAAAACAACTCATTTGGTCAGAACCAGAGGATGGACAAAAACCATGTAGTGACCATTGTTACATGGCTAGTTCAATGGAAGGACAAGTTGAAGAAGACTTTAGTGTTTCAAATTGGAAACTTTTGGAGAAAGAATTATACTCAAAGGGAATAGAAATGTTTGGGAGAAATAGTTGCCTTATATCTAAAAACTTATTTTTTGGATGCAAAACTTGCAAGGAAGTTGCTACGTACATGCATTATGAAATGTCAATTCTAGATGTATCTGAGGACCAAAAAGGAAAATTTAATGAAATTTCATCCAAGCCACGTAGGCATAAGAAAAAGCTCAAACATAAGAGGCTTAAAATTTCTTCAAAGTCAGCAGGAGTTTCATCTGTATGGAAACAAATGACTAATGGGAAAGAAAAGTATATTCCATATACACCTTGTGAATGTGAAGGTGTGTGTGGAAAGAAATGTTCTTGTGTTAATAATGGATTTTGTTGCGAAAAATATTGCGGGTGTTCTAAGCTATGTAATAAACGATTCGGAGGATGTCATTGTAATAAGGGTCAATGCAAAACTCGAAAATGTCCATGTTTTGCAGCAAGACGAGAATGTGACCCAGATGTATGTCGGAATTGTTGGGTTAGTTGTGGAGATAATTTATTAGGAGAGTCGTCTCATCGTGAAGAATATCAATGTGAAAATATGGTATTTCTTTTAAAGAAAAAACAGAAGGTTCTTTTGGCAAGGTCTGATGTTGTTGGATGGGGAGTTTTCATAAAGAATCCTGTAAACAAAGATGAGTTTATAGGAGAGTATACCGGTGAAATACTCACTCAGAAAGAAGGTGATAAACGTGGAAAAGTGTATGACAATGCAGACTTTTCTTTCCTTTTTAACTTGAATAATGAGTATTGTCTTGACGCTTATCGTAAAGGAAACAAGTTAAAATTTGCAAACCACTCGAAAAATCCCAATTGCTACGCAAAGCTTATGGTCGTTGCTGGAGATCATCGAATGGGAATATTTGCAAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCGTTGATTACAACTATGATAAAAATGTTCGAAGCCTACGATGGTATCGTAAACTTGTAGATGAAGATAATTCCGAGAAAAGTGATCCAACATTTTTTAATAAAAAAAGCTAA 2013 0.3552 MASIAIDRAFESQEKHGGGETNTRQTLENNIDLIKTQIQKDRVKSIQIARNGKYIQSQVSNAMLKISRNKSLQTEQNNFQKLSSKMDHPMCKFNGSVTQVLEEDDNIYTLDAPSVESVKIPYINRLPTNTVWIPLSRNEKMTEEDSSARRKNVFYDHRKGKTIVSSDNEELEEDEEAKHNFSEGEDKFLRMVFEEYGLADEEVLSIVSEVIGCPSSEIQERYKVIEESDQNSRYHGESESDIETFLNQSLSETLEAFDPLFCRKCMIFNCSLHGNSQKIIYPRKKQLIWSEPEDGQKPCSDHCYMASSMEGQVEEDFSVSNWKLLEKELYSKGIEMFGRNSCLISKNLFFGCKTCKEVATYMHYEMSILDVSEDQKGKFNEISSKPRRHKKKLKHKRLKISSKSAGVSSVWKQMTNGKEKYIPYTPCECEGVCGKKCSCVNNGFCCEKYCGCSKLCNKRFGGCHCNKGQCKTRKCPCFAARRECDPDVCRNCWVSCGDNLLGESSHREEYQCENMVFLLKKKQKVLLARSDVVGWGVFIKNPVNKDEFIGEYTGEILTQKEGDKRGKVYDNADFSFLFNLNNEYCLDAYRKGNKLKFANHSKNPNCYAKLMVVAGDHRMGIFAKERIEAGEELFVDYNYDKNVRSLRWYRKLVDEDNSEKSDPTFFNKKS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0465 670 Pfam CXC domain 462 493 IPR041355 -
Psa3g0465 670 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 20 309 IPR045318 GO:0006338|GO:0018024
Psa3g0465 670 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 312 652 IPR045318 GO:0006338|GO:0018024
Psa3g0465 670 SMART CXC_2 458 495 IPR033467 -
Psa3g0465 670 CDD SET_EZH 528 639 - -
Psa3g0465 670 MobiDBLite consensus disorder prediction 1 24 - -
Psa3g0465 670 SUPERFAMILY SET domain 425 640 IPR046341 -
Psa3g0465 670 Gene3D SET domain 424 640 IPR046341 -
Psa3g0465 670 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 312 652 - -
Psa3g0465 670 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 20 309 - -
Psa3g0465 670 Pfam SET domain 534 638 IPR001214 GO:0005515
Psa3g0465 670 ProSiteProfiles CXC domain profile. 397 509 IPR026489 -
Psa3g0465 670 ProSiteProfiles SET domain profile. 523 638 IPR001214 GO:0005515
Psa3g0465 670 SMART set_7 523 644 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0465 Psa-Chr3 44256010 44261648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0465 512 637 C2H2 Transcription Factor Family AT2G23740 30.070 1.08e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g0465 SET 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0465 - - cam:101494145 771.926