Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0456 ATGGACAATAATGCATCTCCTCAAGTTGAGTCAGGTGAAACATCTTTAGAGGTTAAACCAGATTCTCAAGCATCCAAGAAAAGGAAAATGATTCAGAAAAGGGTTGTGAGTGTGAGGATTGGAGAGAATGTTAGTAAGGTGAAGAATGAAGGACTTCCTTCAGATTTATGGTCATGGAGGAAATATGGACAAAAGCCAATCAAAGGTTCTCCATATCCAAGGGGATATTATAGATGCAGTACATCCAAAGGTTGTTCCGCCAAAAAACAAGTAGAGCGAAGTAGCACAGATTCTTCAATGCTTGTCATCACATATACTTCAACCCACAACCATCCAGATCCCACGGCCGTCTCTGCCACAAATTCAGCTCGAAAACCAAAAGATTCCGAATCTGAAACCGAAACAATCCAAGATATCCCGATTACCTCTAAGGAAGAAGACCAAGAACACGTAGAACAAGAAACGAATAATACTAAGAGCAGTGTGACAAATGAAGAAAATTTTCATTATTTACAATCTTCAATAGAAGATCCTTTCAAACTAAACATGGAAAAACACCATATAGATCTTGTTTTAGAGGAAAAACCAGTCTTCTATGCAGCAGAGTTAGAGAATTCGTCAGAATCAAAATCAGAAGAACTTGATTATTTCGATGAGCTTGAGGAGTTACCTATGTCTTCATCTGTTTTTCAGTTTACTAGGAGCATTTTTTCTGATGAAAGGATTCCTGTTGCCCCTTCTTGA 744 0.3817 MDNNASPQVESGETSLEVKPDSQASKKRKMIQKRVVSVRIGENVSKVKNEGLPSDLWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERSSTDSSMLVITYTSTHNHPDPTAVSATNSARKPKDSESETETIQDIPITSKEEDQEHVEQETNNTKSSVTNEENFHYLQSSIEDPFKLNMEKHHIDLVLEEKPVFYAAELENSSESKSEELDYFDELEELPMSSSVFQFTRSIFSDERIPVAPS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0456 247 MobiDBLite consensus disorder prediction 105 124 - -
Psa3g0456 247 SUPERFAMILY WRKY DNA-binding domain 49 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g0456 247 MobiDBLite consensus disorder prediction 1 19 - -
Psa3g0456 247 PANTHER WRKY TRANSCRIPTION FACTOR 69-RELATED 15 230 - -
Psa3g0456 247 MobiDBLite consensus disorder prediction 1 31 - -
Psa3g0456 247 MobiDBLite consensus disorder prediction 125 154 - -
Psa3g0456 247 SMART WRKY_cls 53 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g0456 247 Pfam WRKY DNA -binding domain 55 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g0456 247 MobiDBLite consensus disorder prediction 105 165 - -
Psa3g0456 247 ProSiteProfiles WRKY domain profile. 48 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g0456 247 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 230 IPR044810 GO:0003700
Psa3g0456 247 Gene3D WRKY domain 39 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0456 Psa-Chr3 43889897 43891666 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0456 20 119 WRKY Transcription Factor Family AT2G34830 64.356 1.86e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa3g0456 WRKY 3.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0456 - - gmx:100127368 329.331