Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0450 ATGCTTGAGATTCAGAATGAACCACCGGAGCAAATCGTGAATTTCATCGGAGAATCAACAAACTCTCAATTTCCTCATAACACTTTCCCCAATCACGCAACCGCTCCAAATCCGAATCCGAATCCTAACTTCTCCATCCCTCGTCATCCTCCTCCTCGCAAACGACCGTGGGGAGCTTCTCCAGATCAAGTTGATATTCCCGGTCATGTTAAAGTTTACGTTGCACCAGTTCCTAGAACATTATCTGAGGCCGAGCTCCGACTTGTGTTCGAAGGATATGGAACTATTGTCGAGGTTGTTCTTTTAAGGGATAAGGCAACTGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTTAATGAAGCTGAAATGGCTATTAAGGCTTTAAGCAATCAGTATATATTTCCTGGAGAATCAGTTCCTGTTGTTGTCAGATTTGCCGATCGTGAACTTGAACGTTTTGGGCTTCGAGGGGGCTTCTGTCGAAACATGGAAAAGAAAGAACCTCCGGAAGGGGTGGATAAAATTTTTGTTAGTTACATAAACAAAGAGGCTTCAAGACAGGACATTGAAGAAATATTTTCCCCCTACGGGTATATAGAAGATGTCTATATCGTGCGGAATCGTGGATATGGTTTTGTCAGATTTTCTAATAGAGAGATGGCGTTGGCAGCAATCAAAGGGTTAAATAGAACATTCACGATGAGAGGTTGTGATCAACCGTTAATTGTTCGTTTTGCGGAACCTAAGAAACCTAGGATGGGAGAATCAAGGGGCAACTACTTACCCGCGAATGCAAATTACGGTCCCAGTTCTCAAGAATCAGCAGTTTGGCCACTGCCGAATTTTTGTGATGCTAATACTGGAGGGAGTGTTGCGCATACTGTTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGTTCATATGCCAAATTGGGAACCTGGGGCTACTGTTGTACAGCAACAATTTCTTCCCCAACATGTACATTCACAATTGGCTCCAATGCCTTTGCGGCCAATTCAACCTCCCAACCTGCCTTCTCAACCATTTATTACTGAGGTGCAGAGACAATTTCATCCAGCAGATTTGCCGGTCCAAACTATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAGCATAACAATTTAGTTGCTGTCAGTACCTCGCCTGATCTGTCTACTAATCCCGAAGATGAAGAGTTTCCAGAGTGTGACTGGAGTGAACATTACTGCCCAGATGGTAACAAATACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCAGAAGAATGTGACAAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCGTTCCTTGCCTGCAGGAATCACAGAAGCAACACAAGCAAGACGATCACAGCATTCCTTACCTGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTCCTTGCTCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTCCTCACCCGCAGTTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAGAGGCAACAGGAAACAAATCACGATCACATGCAGTCAGAAACAAGTCCTGTTGAACAGGTGTGA 1626 0.4428 MLEIQNEPPEQIVNFIGESTNSQFPHNTFPNHATAPNPNPNPNFSIPRHPPPRKRPWGASPDQVDIPGHVKVYVAPVPRTLSEAELRLVFEGYGTIVEVVLLRDKATGARQGSCLVKYSTFNEAEMAIKALSNQYIFPGESVPVVVRFADRELERFGLRGGFCRNMEKKEPPEGVDKIFVSYINKEASRQDIEEIFSPYGYIEDVYIVRNRGYGFVRFSNREMALAAIKGLNRTFTMRGCDQPLIVRFAEPKKPRMGESRGNYLPANANYGPSSQESAVWPLPNFCDANTGGSVAHTVPHHSRLPHQQVNVHMPNWEPGATVVQQQFLPQHVHSQLAPMPLRPIQPPNLPSQPFITEVQRQFHPADLPVQTIEQQLSSQLPTQTEHNNLVAVSTSPDLSTNPEDEEFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEECDKESQKQHKQDDHSVPCLQESQKQHKQDDHSIPYLQESQKQHKQDDHSIPCSQESQKQHKQDDHSIPHPQLSLSSSQEVSQRQQETNHDHMQSETSPVEQV* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0450 541 Gene3D - 64 155 IPR012677 -
Psa3g0450 541 ProSiteProfiles WW/rsp5/WWP domain profile. 412 439 IPR001202 GO:0005515
Psa3g0450 541 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 61 490 - -
Psa3g0450 541 SUPERFAMILY RNA-binding domain, RBD 170 270 IPR035979 GO:0003676
Psa3g0450 541 Gene3D - 163 257 IPR012677 -
Psa3g0450 541 SUPERFAMILY WW domain 411 440 IPR036020 GO:0005515
Psa3g0450 541 Pfam WW domain 410 437 IPR001202 GO:0005515
Psa3g0450 541 ProSitePatterns WW/rsp5/WWP domain signature. 412 437 IPR001202 GO:0005515
Psa3g0450 541 MobiDBLite consensus disorder prediction 507 522 - -
Psa3g0450 541 SUPERFAMILY RNA-binding domain, RBD 39 159 IPR035979 GO:0003676
Psa3g0450 541 SMART rrm1_1 71 147 IPR000504 GO:0003723
Psa3g0450 541 SMART rrm1_1 177 247 IPR000504 GO:0003723
Psa3g0450 541 MobiDBLite consensus disorder prediction 445 506 - -
Psa3g0450 541 SMART ww_5 407 439 IPR001202 GO:0005515
Psa3g0450 541 CDD WW 410 439 IPR001202 GO:0005515
Psa3g0450 541 MobiDBLite consensus disorder prediction 445 541 - -
Psa3g0450 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 151 IPR000504 GO:0003723
Psa3g0450 541 PANTHER RNA BINDING PROTEIN 61 490 - -
Psa3g0450 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 236 IPR000504 GO:0003723
Psa3g0450 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 136 IPR000504 GO:0003723
Psa3g0450 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 251 IPR000504 GO:0003723
Psa3g0450 541 Gene3D - 394 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0450 Psa-Chr3 42554783 42562283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0450 66 255 Eukaryotic Initiation Factors Gene Family AT1G71770 29.146 4.58e-14 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0450 3 42554783 42562283 Psa3g0450 3 42554783 42562283 ECH