Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0447 ATGGATGCGAAAGATATCCTTGGTTTACCCAAAAACTCATTCCCATCTTCAATTGAGAAAAAATCTCGACCTCCCAAAGAATCTCAGAGAAAACCTGATGGCATTTCTCGCGAGGTTTATGCACTTACCGGTGGCGTGCCACCTCTTATGCCCGCTGTTGATGCTTCACAATTGAAGAAAAAGCCTCCTCCTCATGAAAAGGTTACTTGGCAGTGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTAATCTTTACCATTGGGTTCGAATAGTCAACGGTGTTCTACCTACGGGAGACTATTCCTTTGCCAAGTATAACAAGTCTGTTGATATTATCAAGTACACAGACGAGGAGTATGAAAAGTATTTGACAGATCCTACGTGGACCAAGGAAGAGACAAATGAACTATTCGACTTGTGTGAGAGGTTCGATCTTCGTTTTGTTGTGATAGCTGACAGGTTCCCATCATCTCGGACTGTTGAGGAGTTAAAGAGTCGATATCATAGTGTGTCGCGGGCTATATTACTTGCTAGGGCTACATCTTCAGGGGATGTCGCAACACATCCTCTCATAAAGGAACCTTATAATGTTTCACAAGAAATGGAACGTAAACGGGCACTGTCCATGGTCCTCTCCCAAACAAGACAACAAGAGAAAAGAGATGAAGAGGTTCTTATTGAAGCAAAAAGAATAGCCGAGTTACGGATGGCTTCAAAGGTTACTGAACAGTCTCAAACGGCTGTTGCTACAAATGCTGATGCAGGAGTTACAGAGAGGGCTGTCCCTGGTGAGACTATATCTCCATCAAATGTGCAACTTCCACCAATGGTTGTTCCTCCATTGGCAGACAATGCTTCTACTCTAGCTTCTCTTCGTATGCTTCGAGTATATTTGAGGACATATGCACTTGATCAAATGGTGCAAGCTTCAAACTCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACATTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAGAGAAATACTAACTTGGCTGAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCATCTTTCCGTGACGGGTCCTACGGTGAAACACCAGGCACACCAAAGGATCGCACATTTATTCCCGACTCTTTGAATTTTGGAGTTTCAGGCGAAAGGGTTAGCAAAAAGGACCAAAAACGCAAGGCGCATGGAGCTCCACCTACAGCGGCCCATAAAAGACCTAGAAAACAAAAGGCTTCGGATCTTTAA 1308 0.4373 MDAKDILGLPKNSFPSSIEKKSRPPKESQRKPDGISREVYALTGGVPPLMPAVDASQLKKKPPPHEKVTWQWLPFTNSARKDDLNLYHWVRIVNGVLPTGDYSFAKYNKSVDIIKYTDEEYEKYLTDPTWTKEETNELFDLCERFDLRFVVIADRFPSSRTVEELKSRYHSVSRAILLARATSSGDVATHPLIKEPYNVSQEMERKRALSMVLSQTRQQEKRDEEVLIEAKRIAELRMASKVTEQSQTAVATNADAGVTERAVPGETISPSNVQLPPMVVPPLADNASTLASLRMLRVYLRTYALDQMVQASNSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKDRTFIPDSLNFGVSGERVSKKDQKRKAHGAPPTAAHKRPRKQKASDL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0447 435 MobiDBLite consensus disorder prediction 1 35 - -
Psa3g0447 435 SMART sant 126 175 IPR001005 -
Psa3g0447 435 MobiDBLite consensus disorder prediction 370 435 - -
Psa3g0447 435 Gene3D - 99 186 - -
Psa3g0447 435 PANTHER BNAA04G26950D PROTEIN 2 435 - -
Psa3g0447 435 Pfam SANT/Myb-like domain of DAMP1 102 176 IPR032563 -
Psa3g0447 435 SUPERFAMILY Homeodomain-like 126 172 IPR009057 -
Psa3g0447 435 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 435 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Psa3g0447 435 MobiDBLite consensus disorder prediction 20 34 - -
Psa3g0447 435 CDD SANT_DMAP1_like 130 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0447 Psa-Chr3 42310490 42316550 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa3g0447 SANT_DAMP1_like 2e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0447 K11324 - gmx:100818926 719.539