Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0428 ATGGCATCAGGTGGTGTTGCAGCACCTGTTTCTGGATTTATAGATAAGAATGCAAGTTCTGTTGGTGTTGAGAAGTTGCCTGAGGAAATGAATGACATGAAAATTAGAGATGATAAGGAAATGGAAGCTGCTACTGTTGTTGTAGATGGAAATGGGACTGAAACTGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGTCAGCCAAAGCAGACGATAAGTTACATGGCCGAGCGCGTGGTTGGACATGGATCTTTCGGTGTAGTTTTTCAGGCGAAGTGTTTGGAGACGGGAGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGTCTTTTGGACCACCCGAATGTTGTATCATTGAAGCATTGCTTCTTCTCGACGACTGAAAAGGATGAGCTTTATCTTAACTTGGTGCTTGAGTATGTTCCTGAGACGGTTAGTCGTGTGATCAGACATTACAACAAAATGAATCAAAGAATGCCTATGATATATGTCAAACTTTACTCTTACCAGATTTGCAGAGCACTTGCGTATATTCACAACAGTATTGGAGTATGTCACAGAGATATTAAACCTCAAAATTTACTGGTCAATCCTCACACGCACCAACTGAAGATATGCGACTTCGGAAGTGCTAAAGTCTTGGTTAAAGGTGAACCGAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGCGCAACCGAGTACACCACAGCCATTGATATTTGGTCAGCCGGTTGCGTACTCGGTGAACTTTTGCTTGGTCAGCCGCTTTTTCCTGGTGAGAGTGGTGTCGACCAACTCGTGGAAATTATCAAAGTTTTAGGGACTCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTATACAGAGTTTAAATTTCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGCGAATGCCGCCGGAAGCTGTCGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTCCGAAGCACGGCTTTGGAGGCACTGGTACATCCATTCTTTGACGAGCTGCGTGATCCAAACACTCGGTTGCCGAATGGACGTTTCCTTCCTCCGTTATTTAACTTCAAAGTCACTGAGCTGAAGGGAGTTCCGGCTGAGATGCTGGTGAAGCTGGTTCCACCTCATGCAAGAAAGCAATGTGCCTTGTTTGGATCCTCATCATGA 1245 0.4337 MASGGVAAPVSGFIDKNASSVGVEKLPEEMNDMKIRDDKEMEAATVVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVSRVIRHYNKMNQRMPMIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKVTELKGVPAEMLVKLVPPHARKQCALFGSSS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0428 414 CDD STKc_GSK3 71 363 IPR039192 -
Psa3g0428 414 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0428 414 Gene3D Phosphorylase Kinase; domain 1 60 155 - -
Psa3g0428 414 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Psa3g0428 414 Gene3D Transferase(Phosphotransferase) domain 1 156 404 - -
Psa3g0428 414 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0428 414 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 410 - -
Psa3g0428 414 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 410 - -
Psa3g0428 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Psa3g0428 414 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0428 414 SUPERFAMILY Protein kinase-like (PK-like) 75 388 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0428 Psa-Chr3 40894623 40898140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0428 82 363 Core Cell Cycle Gene Families AT1G76540 35.172 4.77e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Psa3g0428 Pkinase 2.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0428 K00924 - gmx:100788046 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0428 3 40894623 40898140 Psa3g0428 3 40894623 40898140 ECH
Psa3g0428 3 40894623 40898140 Psa6g3661 6 317523802 317527526 ECH