Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0425 ATGGAAGCTTTTCAATTGTACGGTAATGGTAATGGTAGTGGTTCTGATTTGAGGGCTATGGGGAAAAGACCAGAGTGGGATATCAATAATTGGAAATGGGATGGTGATCTTTTCATAGCTAGTAGGTTGAGTCCTGTGCCGGAGCAGAGACAATTTTTGCCTCTTCCTGTTGGTGTTGGTGGTGGTGGTGGTGGTTTCTCTAATTCAAATAGTTCATCTTCTTGTTCTGAACAGTTAGATCTTGTGATTTCTCAAGGGAACAAGGAAGGGGAGAGGAAGAGGAGGGTTATTGTAGTGGAGGATGAACTGAGTTTGAATAAGGAAGGTGGTGGTCTTAGCTTAAACCTTGGTGGTGGCGGCGGTGGTCATGCTCAAATTGCTACATGGGAAGGGAACGCTGGGAAGAAAAGTAGAGTAGCTGGTGGAGGTAGCTCCAGTAGAGCATTTTGTCAGGTGGAGGATTGTCGTGCAGATCTCAACAATGCTAAAGATTATCACAGGCGGCATAAAGTTTGTGAGATACATTCGAAGGCCAGTAAGGCTCTTGTTGGAAACACGATGCAGCGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGGCGTTTGGCAGGCCATAATAAAAGGAGGAGGAAAACAAATCAGGATGCTGTTCCTAATGGAAGCTCACCGAACGATGATCAGACCAGTAGTTATTTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCAGCCTGAAAGGTCAAATCAGACCACTGATCAGGATCTGCTTACTCATCTTTTAAGGAGTCTTGCTAATCAGAATGGTGAACAAGGGGGAAGGAACTTGTCTAACCTTTTACGGGAACCTGAAAATCAGTTGAAAGAAGGGTCTTTATTTGGGAAATCTGAGGTGGTTTCTACTTTATTTACTGATGGTTCTCAAGGTTCTCCAACTGTCACAAGACAGAATCAAACAGTTTCTATTAGTGAAATTCAGCATCGAGTGATGCACGCACATGATGCTACGGTTTTTGATCAACAAACCACATCTTCTGCAAAGCCTGGTGTTTCAAATAGCCCTCCAGCTTACTCAGAAGCCAGAGACAGTACCGCTGGACAGCCCAAGATGAATGATTTTGATCTGAATGACATCTATATTGACTCAGACGATGGCATAGAGGACATAGAAAGGTTGCCCGTCGCTGCAAATCTTGTTACTAGCTCTCTTGATTATCCATGGATGCAACAGGATTCGCATCAGTCAAGTCCACCTCAAAGTGGAAACTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCCACTGGCGAAGTTCAGAATCGCACGGATCGAATTGTTTTTAAACTCTTTGGTAAAGAACCGAGCGATTTTCCTCTTGTACTCAGAGCACAGATTCTTGACTGGTTATCCAACAGTCCAACTGATATTGAAGGCTATATACGGCCTGGTTGTATTGTTTTGACTATTTACCTGCGTCAGACTGAGGCTGTGTGGGAGGAGCTTTGCTTTGATCTGACTTCCAGTTTAAATAGGCTTCAGGATGTCTCAGATGATGAATTTTGGAGAACTGGATGGATTCACATCAGGGTGCAGAATCAGATGGCCTTCATTTTCAATGGCCAGGTTGTCATTGATACATCCCTACCTTTCAGGAGTAACAATTATGGTAAGATTTTGAGTGTTAGTCCAATTGCCGTACCAGCATCAAAGACAGCTCAATTTTCTGTGAAGGGTGTCAACCTGATTCGCCCTGCCTCTAGGTTATTGTGTGCTTTAGAAGGGAATTATTTGGTCTGTGAAGATACTCATGAGTCTATGGATCAATGCTCCAAGGATCTTGATGAGCTTCAGTGCGTCCAATTTTCATGTTCTGTCCCTGCGATGAATGGACGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGCAGTTTTTTCCCTTTCATAGTTGTGGAGGAGGATGTTTGCTCTGAAATCTGCGTGCTCGAGCCTTTACTGGAAAGTGATACTTATCCAGATGCTGAAGGGGCAGGGAAAATTCAAGCAAAAAATCAAGCCATGGATTTCATTCATGAAATGGGCTGGCTTCTCCACAGAAGCCAAATAAAATCTAGGACGGTTCACCTGAAGTCTAGTCCAGATCTGTTTCCATTAGATCGATTCAAGTGGCTCGTGGAGTTCTCTGTGGACCACGATTGGTGTGCCGTAGTTAAAAAACTATTAAACCTCCTCCTTGATGGAACAGTGAGTACAGGAGACCACACATCCTTGTATGTTGCACTCTCAGAGTTGGGTCTCCTTCACAGATCTGTGAGGAGAAATAGCAGACAATTGGTGGAGCTTCTTTTGAGATTTGTTCCTCAAAATATTTCAGATAAAATAGGACCTGAAGACAAGACGCTGGTTAATGGAGAGAATCGACAATTCTTGTTTAGACCTGATGTTGTCGGTCCTGCTGGTTTGACACCACTTCATATAGCAGCCGGGAAAGATGGTTCTGAGGATGTTCTGGATGCTTTGACTAATGATCCCTGCATGGTGGGAATTGAAGCATGGAAAAGTGCTCGTGACAGCACAGGGTCAACACCTGAGGATTATGCACGTTTACGTGGTCATTACACTTACATTCACTTGGTGCAAAAGAAAATCAACAAGAGACAAGGAGGGGCTCACGTCGTGGTTGATATTCCTAGCAAACCGGCAAGGCTCGATACAAACAAGAAGAAAGATGAATCGTCCACTAGCTTTGAGATTGGAAATGCTGAAGTTAAAAGTATCCAAAAGCACTGCAAACTTTGTGACCGTAAGTTGTCATGTAGAACTTCTGTAGGGAAGTCTTTCATATACAGACCTGCAATGCTGTCAATGGTTGCCATAGCAGCAGTCTGTGTCTGCGTAGCTCTTCTCTTCAAAAGCTCGCCCGAAGTTCTGTACATATTCCGACCTTTCAGGTGGGAATCGTTGGAGTTTGGAACAAGCTGA 3018 0.4374 MEAFQLYGNGNGSGSDLRAMGKRPEWDINNWKWDGDLFIASRLSPVPEQRQFLPLPVGVGGGGGGFSNSNSSSSCSEQLDLVISQGNKEGERKRRVIVVEDELSLNKEGGGLSLNLGGGGGGHAQIATWEGNAGKKSRVAGGGSSSRAFCQVEDCRADLNNAKDYHRRHKVCEIHSKASKALVGNTMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSSPNDDQTSSYLLISLLKILSNMQPERSNQTTDQDLLTHLLRSLANQNGEQGGRNLSNLLREPENQLKEGSLFGKSEVVSTLFTDGSQGSPTVTRQNQTVSISEIQHRVMHAHDATVFDQQTTSSAKPGVSNSPPAYSEARDSTAGQPKMNDFDLNDIYIDSDDGIEDIERLPVAANLVTSSLDYPWMQQDSHQSSPPQSGNSDSASAQSPSSSTGEVQNRTDRIVFKLFGKEPSDFPLVLRAQILDWLSNSPTDIEGYIRPGCIVLTIYLRQTEAVWEELCFDLTSSLNRLQDVSDDEFWRTGWIHIRVQNQMAFIFNGQVVIDTSLPFRSNNYGKILSVSPIAVPASKTAQFSVKGVNLIRPASRLLCALEGNYLVCEDTHESMDQCSKDLDELQCVQFSCSVPAMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLESDTYPDAEGAGKIQAKNQAMDFIHEMGWLLHRSQIKSRTVHLKSSPDLFPLDRFKWLVEFSVDHDWCAVVKKLLNLLLDGTVSTGDHTSLYVALSELGLLHRSVRRNSRQLVELLLRFVPQNISDKIGPEDKTLVNGENRQFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGGAHVVVDIPSKPARLDTNKKKDESSTSFEIGNAEVKSIQKHCKLCDRKLSCRTSVGKSFIYRPAMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWESLEFGTS* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0425 1005 MobiDBLite consensus disorder prediction 352 372 - -
Psa3g0425 1005 MobiDBLite consensus disorder prediction 352 382 - -
Psa3g0425 1005 SUPERFAMILY Ankyrin repeat 775 891 IPR036770 -
Psa3g0425 1005 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 18 1004 - -
Psa3g0425 1005 Gene3D - 749 899 IPR036770 -
Psa3g0425 1005 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 1004 IPR044817 GO:0003677
Psa3g0425 1005 MobiDBLite consensus disorder prediction 421 450 - -
Psa3g0425 1005 MobiDBLite consensus disorder prediction 214 237 - -
Psa3g0425 1005 SUPERFAMILY SBT domain 148 228 IPR036893 GO:0003677|GO:0005634
Psa3g0425 1005 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Psa3g0425 1005 Gene3D - 141 211 IPR036893 GO:0003677|GO:0005634
Psa3g0425 1005 Pfam SBP domain 150 223 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0425 Psa-Chr3 40699166 40706904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0425 1 1005 SBP-box Gene Family AT3G60030 53.346 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa3g0425 SBP 1.2e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0425 3 40699166 40706904 Psa3g0425 3 40699166 40706904 ECH