Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0424 ATGAGTGGAAAGGTAATTATATCAGTTGTTTCTCTTATCCTTGTCGTTGGTGTTGCCATCGGCGTTGTTGTCGCTGTTCACAGGAATGGTGAAGATCCTGAGATCCAAACTCAACAAAGATCTGTTCAAATCGTTTGTCAAAATGCAGAAGATAAAAAGCTTTGCCATGACACTCTTAAATCCGTTAATGGCCTCGACTGCGCAGATCCAAAGGCATACGTAGCAGCTGTCGTGAAAGCCACCACGGACAGTGTCATCAAGGCTTTCAACATGAGTGACAGACTCTCCACGGAGTACGGTAGCAAAGATAATGGCGTCAAGATGGCTCTTGATGACTGCAAAGATTTGTTGCAGTTTGCTATGGACAGTCTCGAAATGTCCACCAATATGGTTCGTGACAACAACATCCAAGCTGTGCATTCCCAAACTCCTGATCTCAGGAATTGGTTGAGTTCAGTTATCTCTTACCAACAAAGTTGCATGGAAGGATTTGATGATGAAAAAGACGGCGAGAAAAAGATCAAGGAGCAATTTCAAGTAGAGTCTTTGGACGGCATACAAAAGATCACTAGTGTTGCACTTGATATTGTCAGTGGTTTGTCCAACATCCTTCAACAATTCAACTTGAAGCTTGATCTTAAACCGGCTTCTCGTCGTCTTCTTGCTGAGGATATTGACGATGAAGGATTCCCTTCATGGTTCTCTGCTTCTGATCGTAAGCTTTTGGCTTCAATGCAAGGAAAAGGATGGAGATCAAAGGTTAAGCCTAATGCCATTGTTGCCAAGGATGGTAGTGGACAATTTAGAACCATTAAGGATGCTATTGCCGCTTACCCTAGTGGAAACAAGGGAAGATATGTTATCTATGTTAAGGCCGGTGTTTATGACGAGTACATCACCGTCCCTAAGACTGCTGCTAACATCCTTATGTATGGTGATGGCCCTCAAAACACCATTGTCACCGGTAAAAAGTGCTTTGCTAACGGTGTCAAGACCATGCAAACCGCCACCTTCGCCAACACTGCACCTGGATTCCTCGGAAAGGCAATGACATTCGAGAACACAGCCGGTCCTGATGGTCACCAAGCCGTTGCTTTGAGAAACCAAGGAGATATGTCTGCTTTCGTCGGTTGCCATATCGTTGGTTATCAAGACACATTGTACGTTCAAACCAACAGACAATTCTACCGCAACTGTGTCATCTCTGGAACCATCGATTTCATCTTCGGAATATCACCTACCTTGATTCAACACTCCGTGATCATCGTCAGGAAGCCTAACATGAATCAATTCAGCACAGTTACCGCTGACGGAACAGCCGAGAAGAACATGGCCACAGGTATCGTGATCCAGGATTGCCAGATCGTCCCAGAATCACAATTGTTTCCAGTGAGATTCCAAATAAAATCTTACTTGGGAAGACCATGGAAGGCATACTCAAGGACAGTTGTGATGGAATCCACCATTGGTGACTTCATTCATCCAGATGGTTGGTTCCCATGGACAGGTTCAAACTTCGAAAACACATGTTACTATGCTGAATATGCCAACACTGGACCTGGTGCCGATGTTAGCAAGAGGATCAAGTGGAAGGGTTATCATGGTATCATTAGCAAGGCTGAAGCTAACCAATTCACTGCTGCTGAATTTCTTAAGGCTGGACCTAAGTCTGGAGCTGAGTGGTTGAAGGCTCTTCATGTTCCTCACAATCTTGGCTTCAAAGCTTGA 1728 0.4456 MSGKVIISVVSLILVVGVAIGVVVAVHRNGEDPEIQTQQRSVQIVCQNAEDKKLCHDTLKSVNGLDCADPKAYVAAVVKATTDSVIKAFNMSDRLSTEYGSKDNGVKMALDDCKDLLQFAMDSLEMSTNMVRDNNIQAVHSQTPDLRNWLSSVISYQQSCMEGFDDEKDGEKKIKEQFQVESLDGIQKITSVALDIVSGLSNILQQFNLKLDLKPASRRLLAEDIDDEGFPSWFSASDRKLLASMQGKGWRSKVKPNAIVAKDGSGQFRTIKDAIAAYPSGNKGRYVIYVKAGVYDEYITVPKTAANILMYGDGPQNTIVTGKKCFANGVKTMQTATFANTAPGFLGKAMTFENTAGPDGHQAVALRNQGDMSAFVGCHIVGYQDTLYVQTNRQFYRNCVISGTIDFIFGISPTLIQHSVIIVRKPNMNQFSTVTADGTAEKNMATGIVIQDCQIVPESQLFPVRFQIKSYLGRPWKAYSRTVVMESTIGDFIHPDGWFPWTGSNFENTCYYAEYANTGPGADVSKRIKWKGYHGIISKAEANQFTAAEFLKAGPKSGAEWLKALHVPHNLGFKA* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0424 575 SUPERFAMILY Pectin lyase-like 254 552 IPR011050 -
Psa3g0424 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 200 IPR035513 -
Psa3g0424 575 Gene3D - 251 573 IPR012334 -
Psa3g0424 575 CDD PMEI-like_3 45 202 - -
Psa3g0424 575 PANTHER PECTINESTERASE 3 573 - -
Psa3g0424 575 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Psa3g0424 575 PANTHER PECTINESTERASE 3 573 - -
Psa3g0424 575 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Psa3g0424 575 SMART PMEI_2 37 196 IPR006501 GO:0004857
Psa3g0424 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 197 IPR006501 GO:0004857
Psa3g0424 575 Pfam Pectinesterase 257 552 IPR000070 GO:0030599|GO:0042545
Psa3g0424 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Psa3g0424 575 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0424 Psa-Chr3 40613076 40615251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0424 1 573 Carbohydrate Esterase AT2G47030 39.967 2.46e-144 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0424 K01051 - gmx:100781507 837.025