Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0422 ATGGAAAATGCATTCTCTTCGGCGAAGATATCTGTTTGGTGGGACATTGAAAACTGTCCAGTTCCTAAAAACCTCAACCCTAACTCCATCGCTCAGAACATTGCCTCCGCTCTCATCACCTCCAACTTCCACGGCCCTACCACCATCTCCTGCTACGGCGACACCACTCGCATCCCTTCTCACATTCAACACGCCATCTCTTCCACCGGCATCTCCCTCAACCATGTCCCCTCCGCTAAAGATGCTAAGGAGAAGAAGATACTAGTTGATATGCTGTTATGGGCGATAGACAATCCTGCACCGGCAAACTATTTGCTTATTTCCGGTGACGGAGACTTTTCAAATGCTCTTCATCAACTTAGAATGAGGAGGTATAACATTCTTCTTGCTCATCCTTTTTGCACGTCGGTATCGCTGGTTAACGCCGCCGAAATCGTTTGGCATTGGCCTATACTCATTGCTGGTGGTCCTCCTAATGTCAACATTGCTAGTAATGCATCAAACCAAACCCCTAATTACTCTAACAAACTCATGTATCAACCTAAACCCTCAATTGCACCTCTTCAAGATGGTGAAAAAAATAGTAGCACCAATAATAACCAGAATTACTGTTTTGTCCCTGAAAAATCAAACTCTAAGAAACTCATATATCAACCTAAACCCTCAATTGCATCTCTTCAAATTCAAAGTGAAAAAAATAGCAACAATAATAACAACCAGAATGACTGTTTTGTCCCTGATAAGTCAAATACATCAAAATTGCTTAGATTAGCCCCACATGAATTCTTTTTGAATAATGACCCCACAATAGACTCAATCAGTACTAATGTCCAAAATCAAAATCTTGGCATTACTTGTTCTAATTTTAGTGATAGTCATGATTTGCGACAAAATAGACTGTTAATGCTTCCGGTTTCCTCGGGCTATGATGATGTATCTATTTTGTCTACAATTGCTTCTAAACCAATTAGTAGTTGTTTAACTACATTGCCAAAAGTACTCAACAACCTTGATTGTGATGGTGGTAGTGGTCAGGAATTTTGTAATGAGAATTTGAACCATATTTCTAATTCGGTCGGTGGTTCTGATTCCGTTGGTGGTTCTGATGTACCAATAGTTAAGAGTTCGCCAATAGTCTTAGACTTGCAAGGACTTGTTGATGTTATTCTAGAAACATTGAAAACTCTCAAACATGAAATGGTTTTTCCTAGTGAAAGAAATATTACTGATTGCATTCGTTATGGCGATCCCAAGTATCAAACGATTGATGTTAGGAAGGCTTTGAATTATGCAACTGAGCAAGAGAGAGTGATTAAACGACGTCTTGGTGCATTGCATTTATATGTTTTAGCAAACGAGAATCTCTGGAAATGTGTGAACCCTTTAGGTGGATTGCCAAGTCATTTTCCAGAAGCAATCTGGGTTAGAATCGAGAAATTCCTTGCTTCATCCTCAGGAAGATCCGCAATTTTGGCATCTCGTTGCAGATACGAAGCCGCTTTGATTCTAAAGAGATTGTGCCTTGGAGAACTTGTGTTGGGCGATGTTTTAAAGATTTTGGAGATTATAATCACAGTCAAGAATTGGATTATACCTTGTCATTGTAGTTGGCACCCGATTACCATTTCAGTTATGGAGACAAAAGATGGTAATTGA 1656 0.3967 MENAFSSAKISVWWDIENCPVPKNLNPNSIAQNIASALITSNFHGPTTISCYGDTTRIPSHIQHAISSTGISLNHVPSAKDAKEKKILVDMLLWAIDNPAPANYLLISGDGDFSNALHQLRMRRYNILLAHPFCTSVSLVNAAEIVWHWPILIAGGPPNVNIASNASNQTPNYSNKLMYQPKPSIAPLQDGEKNSSTNNNQNYCFVPEKSNSKKLIYQPKPSIASLQIQSEKNSNNNNNQNDCFVPDKSNTSKLLRLAPHEFFLNNDPTIDSISTNVQNQNLGITCSNFSDSHDLRQNRLLMLPVSSGYDDVSILSTIASKPISSCLTTLPKVLNNLDCDGGSGQEFCNENLNHISNSVGGSDSVGGSDVPIVKSSPIVLDLQGLVDVILETLKTLKHEMVFPSERNITDCIRYGDPKYQTIDVRKALNYATEQERVIKRRLGALHLYVLANENLWKCVNPLGGLPSHFPEAIWVRIEKFLASSSGRSAILASRCRYEAALILKRLCLGELVLGDVLKILEIIITVKNWIIPCHCSWHPITISVMETKDGN* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0422 551 CDD PIN_limkain_b1_N_like 9 132 - -
Psa3g0422 551 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 4 536 - -
Psa3g0422 551 Pfam NYN domain 9 143 IPR021139 GO:0004540
Psa3g0422 551 Gene3D - 3 150 - -
Psa3g0422 551 PANTHER LIMKAIN B LKAP 4 536 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0422 Psa-Chr3 40568225 40570521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0422 2 165 C2H2 Transcription Factor Family AT5G61190 63.030 2.11e-61 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0422 - - mtr:MTR_7g110390 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0422 3 40568225 40570521 Psa3g0422 3 40568225 40570521 ECH