Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0405 ATGTTCACATATTTAACACCCTTCAAAAAACCAAGACTAGAAACTTCAAGCCAAATAGAAACAACCAAGTTACAGCAAGGAGGGTGTGAATATCAAAAAACAGAAAAAGTGAACTTCTCAAATTTCTCTGTACCTGCAGTGTTTCTCAAACCAACTCATCGACAAAACAGTTCAAGAAATGTATTATCTTCAGAAAGAGTACAAGAGAAAGAACTGCTACCAACCCTTGATGAACACTCTGAAGCTGCTGATAACCATAGTAGTGCTTTTGGAATTAGAGAAAAGAGAAAAGCTAGTGATATTGAAGTATGTAATGAACCAGAATCTTCTTCTGCATGTTCACTTGAAGCCTCAAATGATCCAAACTTTGGTTTCAGAGATCATGAGGAGAATTATGACTCGCCATATTTTAGTGATAATGAGGAAGAAACCTCAGAAAATATGTTGAAAGCGAAGCCAGCTCGTGAAGGAAACAGAATCAAGAGAAGCTACAAGAGTGCAAAGAGTCATACTTTAACAGAAAGGAAGAGAAGAGATAAAATCAACGAGAAAATACGTATATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACGAGGCTTCAATGCTTGATGATGCCATTGATTATCTCAAGACCCTCAAGCTTCAGCTACAGATTATGACAATGTGTAGAGGACTTTGTATGCCACTTAATCATCTTATGATGTTACCACCAACACATCATATGAATATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACAAGTACAGTTTCCTATTCCACAAATGAATAATGGTGTCACAGATGATAATAACAACATCAGAGTTCAGATGTTTGGTTTTTCCAACCAATTACCACCACCAATGTCAATTCATAATGCACCTTTCACAGTTCCTGTCATTGGAAACTCTTCCACTGCACCAACCTCTTTTCAGTAA 948 0.3692 MFTYLTPFKKPRLETSSQIETTKLQQGGCEYQKTEKVNFSNFSVPAVFLKPTHRQNSSRNVLSSERVQEKELLPTLDEHSEAADNHSSAFGIREKRKASDIEVCNEPESSSACSLEASNDPNFGFRDHEENYDSPYFSDNEEETSENMLKAKPAREGNRIKRSYKSAKSHTLTERKRRDKINEKIRILKELIPNCNKMDEASMLDDAIDYLKTLKLQLQIMTMCRGLCMPLNHLMMLPPTHHMNMNMNAQHLMGFRPQVQFPIPQMNNGVTDDNNNIRVQMFGFSNQLPPPMSIHNAPFTVPVIGNSSTAPTSFQ* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0405 315 PANTHER TRANSCRIPTION FACTOR PIF3 1 58 IPR044273 GO:0003700|GO:0006355
Psa3g0405 315 PANTHER TRANSCRIPTION FACTOR PIF3 80 312 IPR044273 GO:0003700|GO:0006355
Psa3g0405 315 Pfam Helix-loop-helix DNA-binding domain 168 214 IPR011598 GO:0046983
Psa3g0405 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 225 IPR036638 GO:0046983
Psa3g0405 315 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 58 - -
Psa3g0405 315 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 80 312 - -
Psa3g0405 315 SMART finulus 171 220 IPR011598 GO:0046983
Psa3g0405 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Psa3g0405 315 Gene3D - 161 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0405 Psa-Chr3 37980728 37982174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0405 37 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.018 5.22e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g0405 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0405 K12126 - gmx:100804665 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0405 3 37980728 37982174 Psa3g0405 3 37980728 37982174 ECH