Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0393 ATGAGAAAATCCAATACTTCAAATTCCTCTTCATCTATTAGCAGCAACACCAACCACCATCTTTTCATTTCAACCGCATCCTCTCTCAACACACAACAACAACAACTTCCCACAGATCTTAGTCTTGGACTCAACATCTCCTCCTCTCAACATTTTCATCTTCACTCCTCTAATCCAAGGAGGCAATGGCAACAAAACTATGATTACAATGATCATAGTAGCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCAATCGGTAGAAAACTCAATATACTTGCTCATCAAAGTTACCATGAGTTAGTCAAGACTCTTGAACACATGTTTGAGACCACCATTCTATGGGGAAATGAGATGGATGAAGTGCAACCAGAAAGATGTCATGTGTTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGTGATGTTCCTTGGGAGATGTTTTTGTCCACTGTGAAGAGGTTGAAGATCACAAGGGTAGACACATTTGGATGTTAG 504 0.3988 MRKSNTSNSSSSISSNTNHHLFISTASSLNTQQQQLPTDLSLGLNISSSQHFHLHSSNPRRQWQQNYDYNDHSSFFVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFETTILWGNEMDEVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0393 167 Pfam AUX/IAA family 65 161 IPR033389 -
Psa3g0393 167 ProSiteProfiles PB1 domain profile. 74 164 IPR000270 GO:0005515
Psa3g0393 167 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 166 IPR003311 GO:0005634|GO:0006355
Psa3g0393 167 Gene3D - 68 166 - -
Psa3g0393 167 PANTHER AUXIN-INDUCED PROTEIN 7 166 - -
Psa3g0393 167 SUPERFAMILY CAD & PB1 domains 65 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0393 Psa-Chr3 36979220 36980689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0393 56 159 B3 DNA Binding Superfamily AT2G46530 34.615 1.46e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa3g0393 AUX_IAA 5.7e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0393 K14484 - gmx:100783140 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0393 3 36979220 36980689 Psa3g0393 3 36979220 36980689 ECH