Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0385 ATGGAGAATCACCACCACAACCACCGTGAATTCTCCTTCTTAACCTCCTCCGGCGACTTCATCCGTAGCAACAACACAGATCCTCCAATCAAAGAAATGAATCTCTTCTCATCATCACCTAACAACAACCAACAAGAAGATCAAGATCAACATGTTAACACAGGACTGAATTTAACGTGTGCAAGTGCTGCAGTATCCAAACTAGAAAATCCTGAGAATTCTGAAACTGAGCTGATGAGTACACTGCAAATTGAATTGAGGAAGGTGCAAGAAGAGAATCAGAATCTAAGAAATGTGTTGGAACAAATCACCAAAAGCTATAGCCAATTACAAGCTCAGTTGTTCATCGCTTTGCAGAAACAAAACCATGTCGATAATATGGAAGCAAATCATGTGATGGAATCATCGGAACAAAAGACTATGAATGATGCATCTGTTTCCGATGGAAAACAAGCTTGTCTTTCTGATCATATTGCAAAAGATGTTGTTGAATGTTCTTCCTCGCACTCATCAAAAACTTTTGAGCAAGACCTAACTCATTTTAGAAAAGCTAGGGTTTCGATACGAGCAAGATCAGAAGCTCCAATGATTAGTGATGGGTGTCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGAAACCCTTGTCCTCGCGCGTACTATCGTTGCACTATGGCCGTAGGATGCCCGGTTCGCAAGCAGGTCCAGAGATGTGCGGAAGACAAAACGGTGTTGATAACAACATACGAAGGCAATCACAACCACCCACTCCCACAGGCCGCAACTGCAATAGCAAACACCACATCAGCCGCTGCAGCAATGCTACTATCAAGTTCTTCAACCTCATCAACACTAAGCAAAGACTCGGCACCATTTTTATCTTCTTTCCCTTACGCTACGATATCAACCCTGTCATCTTCTCAACCATTTCCAACTATAACTCTCGACTTGACAAACAGCCACAGCCTTGCCATGCAAGAAAACAGAATTCCTCTACCGTTACAGCATCCACAACAACTACTAGGTGTTAACCCGTTCTTCTTCTCACAGAAGCTACCAACTATGGCTTTGCCCTTACTACAGCAAGGGCAACGGCCACCTAATTCAATGGTTGAGAGTGTGAGTGCAGCCATTTCTTCGGATCCAAACTTCACTGCAGCCTTGGCGGCAGCGATTTCGTCAATCATTGGAGCACAAAGAGGCGGTGATGATAATAATAGTAACAATGCAAGTGTGGTTCCTGCAGGTTCACCTCAGCTTCCTCTGTCATGCACTACATTCTCTACCAATTAG 1293 0.4354 MENHHHNHREFSFLTSSGDFIRSNNTDPPIKEMNLFSSSPNNNQQEDQDQHVNTGLNLTCASAAVSKLENPENSETELMSTLQIELRKVQEENQNLRNVLEQITKSYSQLQAQLFIALQKQNHVDNMEANHVMESSEQKTMNDASVSDGKQACLSDHIAKDVVECSSSHSSKTFEQDLTHFRKARVSIRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPQAATAIANTTSAAAAMLLSSSSTSSTLSKDSAPFLSSFPYATISTLSSSQPFPTITLDLTNSHSLAMQENRIPLPLQHPQQLLGVNPFFFSQKLPTMALPLLQQGQRPPNSMVESVSAAISSDPNFTAALAAAISSIIGAQRGGDDNNSNNASVVPAGSPQLPLSCTTFSTN* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0385 430 SMART WRKY_cls 197 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g0385 430 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 26 430 - -
Psa3g0385 430 SUPERFAMILY WRKY DNA-binding domain 190 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g0385 430 ProSiteProfiles WRKY domain profile. 192 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g0385 430 Coils Coil 79 113 - -
Psa3g0385 430 Gene3D WRKY domain 182 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g0385 430 Pfam WRKY DNA -binding domain 199 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g0385 430 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 430 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0385 Psa-Chr3 36557567 36560609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0385 1 430 WRKY Transcription Factor Family AT4G01720 37.984 3.16e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa3g0385 WRKY 4.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0385 - - mtr:MTR_7g110720 476.863