Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0360 ATGGCTTCCATAACCGTAATTGGCGCTTCTTCCACATGCAAACTCCCCTCTCTTGAACTCTATAAAAAGCATAAATTAACTTCCATTTCCACTTCCTCCTCCACCGTTAAACTCCACTCCTTCGACGCTAAAAACTCCCGCCACGTCGGTAACAACCTCCTCCTTAGACATAACCGTCTCGCCAATTTCAATTCCTCCGATAGGTTTCTTCCTTCCGCCGTCGCTACTCCTAATTCTTCCTCTTCCTCACTCCTCAGCGACGAAGCATTCCAAGGATTAGGCTCTGGTTTCGACGGCGAAGAAGATGACGATTTCCCTTCCCGAACTGCTTCTCTTAACGCTGATGAACTCGACATTTCCAAACTTGATTTGCCTTCGCAACTTGTTGATTCGCTCCGTGAGCGTGGGATTACGCAACTTTTTCCTATTCAGAGAGCGGTGTTAGTGCCTGCACTACAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACAGGGAAAACACTGGCTTTTGGAATTCCTATTATTAATGGTCTCGAAGATGGCGATCATTCGGCTCGTTACAGTAGCAGGCGTCTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTCATCTCAAAACAGTTTGTATATATGGAGGTGTTTCTTATGTTAGTCAGCAGGGTGCACTTTCACGTGGTGTTGATGTGGTTGTTGGAACGCCCGGTAGGCTGATTGACCTCATCAATGGGAACACACTTAATTTGAGTGAAGTTGAGTATTTGGTACTCGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGCCGTGGAAGTCATTTTGGAAAAGCTTCCAGCTAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGGAAATATCTGGACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCCGAAGGGATAAAACTTTATGCTATATCAGCCACTACCACTTCTAAGAGAACAATTCTTTCTGATCTTATTACAGTTTACGCAAAGGGCGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCCGATGAAGTATCATTGGCATTGACAAATAATATCCCTTCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAGTTTACAGTGCTTGTTGCCACTGATGTGGCATCTCGCGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAACTTCCCAATGATCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGCCGTGCAGGAAAGCTAGGTTCTGCCATTCTGATGTACACAGGTAACCAGAGAAGAACAGTTCGATCCCTTGAGCGCGATGTAGGATGCAAATTTGAATTTGTTAACGTACCGTCTATGGAGGATGTTTTGGAGGCATCTGCCGAGCAAGTTGTTGTCACACTTAATGGAGTCCATCCCGAGTCTATTGCATTTTTCACCCCAACTGCACAGAAACTGATTGAAGAAAAAGGAACAGATGCCCTTGCAGCTGCACTGGCACAGCTGAGTGGATTCTCCAAACCTCCGTCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCCCAAAGATATTTTTCAGCAAGATCAGTCACAGGGTTTCTTGCTGATGTATATTCCAAAGCTGCCGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAATGGTTCAAGGAGCTGTTTTTGATCTTCCAGACGACATTGCTAAAGCGTTACTTGAGAAGGACATACCATCTGGAAACACTATTTCCAAAGTCGCTAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTTCTATGGGAAGTTTTCCGATAGAGAACGAAGTAACCGAAGAGGTTCAAGGGATGGTAGAGGTTTCAGATCCTCAAGGGGACGGGATGGAGGCCGTGGCTCTAATGATGACTTTGGTGATTCAAGGAGGGGTGGCAGAGATGACTTTGGTGACTCAAGAAGGAGGGGTGGCAGAGATGACTTTGGTGATTCAAGGAGGGGTGGCCGAAGTAGTTTTAAATCTGGCAACAGTTGGTCCAATTCCGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCCGGTCTCCATCATCACCTAACAGAAGCTTTGGAGGTGCCTGTTTTAGTTGTGGGGAATCTGGGCATCGGGCGTCGGATTGCCCAAACAGGCTAGGCGGCTCTTTTTAA 2355 0.4522 MASITVIGASSTCKLPSLELYKKHKLTSISTSSSTVKLHSFDAKNSRHVGNNLLLRHNRLANFNSSDRFLPSAVATPNSSSSSLLSDEAFQGLGSGFDGEEDDDFPSRTASLNADELDISKLDLPSQLVDSLRERGITQLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLEDGDHSARYSSRRLPRALVLAPTRELAKQVEKEIKESAPHLKTVCIYGGVSYVSQQGALSRGVDVVVGTPGRLIDLINGNTLNLSEVEYLVLDEADQMLAVGFEEAVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAISATTTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNNIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTGNQRRTVRSLERDVGCKFEFVNVPSMEDVLEASAEQVVVTLNGVHPESIAFFTPTAQKLIEEKGTDALAAALAQLSGFSKPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARSVTGFLADVYSKAADEVGKIHLIADEMVQGAVFDLPDDIAKALLEKDIPSGNTISKVAKLPPLQDDGPPSDFYGKFSDRERSNRRGSRDGRGFRSSRGRDGGRGSNDDFGDSRRGGRDDFGDSRRRGGRDDFGDSRRGGRSSFKSGNSWSNSERSSRDDWLIGGRQSSRSPSSPNRSFGGACFSCGESGHRASDCPNRLGGSF* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0360 784 CDD SF2_C_DEAD 338 467 - -
Psa3g0360 784 Pfam DEAD/DEAH box helicase 141 313 IPR011545 GO:0003676|GO:0005524
Psa3g0360 784 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 499 IPR001650 -
Psa3g0360 784 SMART helicmild6 378 458 IPR001650 -
Psa3g0360 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 479 IPR027417 -
Psa3g0360 784 MobiDBLite consensus disorder prediction 721 758 - -
Psa3g0360 784 MobiDBLite consensus disorder prediction 636 758 - -
Psa3g0360 784 MobiDBLite consensus disorder prediction 653 719 - -
Psa3g0360 784 ProSiteProfiles Zinc finger CCHC-type profile. 763 778 IPR001878 GO:0003676|GO:0008270
Psa3g0360 784 PANTHER - 82 775 - -
Psa3g0360 784 SMART ultradead3 136 341 IPR014001 -
Psa3g0360 784 SMART c2hcfinal6 762 778 IPR001878 GO:0003676|GO:0008270
Psa3g0360 784 CDD GUCT_Hera 552 632 - -
Psa3g0360 784 Pfam Helicase conserved C-terminal domain 350 458 IPR001650 -
Psa3g0360 784 CDD DEADc 128 325 - -
Psa3g0360 784 Pfam Zinc knuckle 762 778 IPR001878 GO:0003676|GO:0008270
Psa3g0360 784 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 82 775 - -
Psa3g0360 784 Gene3D - 118 328 IPR027417 -
Psa3g0360 784 Gene3D - 340 538 IPR027417 -
Psa3g0360 784 Gene3D - 752 783 - -
Psa3g0360 784 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 324 IPR014001 -
Psa3g0360 784 SUPERFAMILY Retrovirus zinc finger-like domains 743 781 IPR036875 GO:0003676|GO:0008270
Psa3g0360 784 Pfam GUCT (NUC152) domain 545 645 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0360 Psa-Chr3 35037545 35044460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0360 96 480 Eukaryotic Initiation Factors Gene Family AT1G72730 35.696 1.53e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0360 - K16911 gmx:100789516 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0360 3 35037545 35044460 Psa3g0360 3 35037545 35044460 ECH