Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0352 ATGGATTACCGATGGACCAAAGGTAAGCATGAAACCGGTGGCCGTGACAGGAAGCAATATACGAAGGATCGGGCTTATGAGGATTCCCTTACTGAGGATTTTCGCATGCCGATCAATCAAAGGCCAACCGAGAACGTTGATTTGGATAATGTGGAACAAGCATCTCTGGATACTCACATAAATTCGTCTAATGTTGGTTTTAAGCTTCTTCAAAAAATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATAGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGGTTGGTAAACAGGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGAGAAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAGAATGTGAGGAAACGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAAATCCGGAAGGTGTTTTATTGTGAACTCTGCAACAAACAATACAAATTGGCAATGGAATTTGAAGCGCACTTGAGCTCATATGATCACAATCACAGGAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGCAGTAGTCGGGATGATAGGCAAAAGCGAGAGCAGCAACGGCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGACTTCAACTGCAGCAAGAATCTGGCTCAACACCAGTTTCAGTTTCCTCCGAATCTAGGACTGCTACCGCGCTAACAGATCAGGAGCAGCGAAATACGTTGAAGTTTGGGTTTTCTTCTAAAGGATTTGCGTCTAAGAACACGGTTGGTGCCAAGAAGCAAAATGTTTCAAAGAAGCAAAATGTTCCAGTGGCCTCTATATTTGGAAACGACAGTGATGAAGAGTGA 909 0.4268 MDYRWTKGKHETGGRDRKQYTKDRAYEDSLTEDFRMPINQRPTENVDLDNVEQASLDTHINSSNVGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGVGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSVSSESRTATALTDQEQRNTLKFGFSSKGFASKNTVGAKKQNVSKKQNVPVASIFGNDSDEE* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0352 302 Pfam Zinc-finger double-stranded RNA-binding 157 184 IPR022755 -
Psa3g0352 302 MobiDBLite consensus disorder prediction 188 218 - -
Psa3g0352 302 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676
Psa3g0352 302 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Psa3g0352 302 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 302 - -
Psa3g0352 302 MobiDBLite consensus disorder prediction 1 24 - -
Psa3g0352 302 MobiDBLite consensus disorder prediction 271 302 - -
Psa3g0352 302 Pfam G-patch domain 63 103 IPR000467 GO:0003676
Psa3g0352 302 SMART G-patch_5 60 105 IPR000467 GO:0003676
Psa3g0352 302 MobiDBLite consensus disorder prediction 223 256 - -
Psa3g0352 302 MobiDBLite consensus disorder prediction 188 256 - -
Psa3g0352 302 Coils Coil 112 139 - -
Psa3g0352 302 MobiDBLite consensus disorder prediction 271 294 - -
Psa3g0352 302 SUPERFAMILY beta-beta-alpha zinc fingers 138 192 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0352 Psa-Chr3 34436539 34440933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0352 1 302 C2H2 Transcription Factor Family AT5G26610 63.518 1.19e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0352 - - mtr:MTR_7g111520 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0352 3 34436539 34440933 Psa3g0352 3 34436539 34440933 ECH