Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0349 ATGAAATATGGAGGTCTTACGGACGTTCATAACAAAATGGATGGTGATTCGGAAGAAGGAGAGGAATTGGCTTCCAACATGGTAATCATAGGTGTCTCCATGTTACTTCTTGCATTGGTAACCATTGCTGTTTTTGCCAACCTAAGTGGTGGCACCAAAGAAGAAAGAAATTTTAAGAGCGTTAGCACTATCTGTGCTAAAACAGAATCACCAGAAACTTGTATTCATATCTTGAAAAATATAGGCGAAAGAGCTTCGGCTTTGGATTATATTAACGCTGCTATTAATGCAACTCTTGAAGAATTAATGATAGTTAATATACCAAAACCTGATTCTGAAATATTCTTAACTGCTTTGCAGACAGAATCTTATAGAGATTGTTTGGAATTGTTGAATATGGGAAAAGATGAGCTCGAACATTTGCAGATGATGGCGAATTCGTCTATGGAATCGGAAGAAATTATCAATAGTCTAAGTGCTATCGTATCTTATCAACAAACATGTTCTAATGAGCTGTTGAAAACAAATAATTTTGATATTTTGGGATATTCTTTGAAATTACCTATTGTTCTTACAAGGATTACATTAGCAATTGTTGATAATTTCTTCGAGAAGCCGGTTTTCGAGGAAGGATTTAAGAAAATGCTGACGAGATCAAATCTTCAAGCTATGGAAGTTGATCATGAGAGTAAAAGAATAACCGTTGCTCCAGATGGTCGCGGCCATTTTAGAACCATAACTGAATCACTCAATGCTTGCGCGCGAAATAAAGAATGTTCATGTGTTATTTATGTGATGAAAGGTGTATATGAAGAGAGAGTTGTGATACCTAAGAGCTTAGAACATGTGTTCATGTATGGCGATGGCCCTACGCAAACGATTGTCACCGGAATCAACACGAGAGGCCCGAAGATTGTTACAACGCCTTTTCGTTCGGCTAGCTTTGTGGTGAAAGGGAAAGGATTCATTTGCAAAGATATGGGATTCACTGCACCTGCTCATATAGCAGGCGCACCTGCACTTGTTGTATTTTGTGATCATGCAGCATTTTTCAACTGCAAAATCGACGGCAAAGAAGGAAGCTTATACGCGGTGGCGCATCGCCAATTCTATGGAAACTGCGAAATTCATGGAAGTGTAGACATTATAAAAGGCGACTCAGCGACTATCATTCAAAACTCGCGAATCATAGTGAAGCGTCAGAATTCTTCTATTGTTCCAAGGAAAAAAGTGGTGAGTGTTCAATCAAGAATAGACAAGCATGAAAGTACTGGTTTTGTGATACAAAACTGCACTATTATAGCAGAAGAATGCGAAACCGATGATAATAATAATAGTCTCGTTGGTTCGACGTGTTTGGGAATTCCGTGTAACGAATATTCGAGAACAGTCGTACTGGAATCGTTTCTCGGAGATGTGATTCGTCCGAGAGGTTGGTGTAAATGGAGTGATAACTATGGAGTTGATACATCAAGTTTTATAGAGTATGATAATAGAGGAATTGGTGCAAAAACGGGTAGGAGGGTGCATTGGGAGAGTTATAGAAAAGTTTCTCAGAATCAGAAAAGTGAAATGATGAAATTTACAGCTGATGAGTTTATTCAAGCAGATAAATGGTTGAAAAATACTGGTATTCCATATGAATCTGGACTTTTCTTCCATAAATAG 1668 0.3807 MKYGGLTDVHNKMDGDSEEGEELASNMVIIGVSMLLLALVTIAVFANLSGGTKEERNFKSVSTICAKTESPETCIHILKNIGERASALDYINAAINATLEELMIVNIPKPDSEIFLTALQTESYRDCLELLNMGKDELEHLQMMANSSMESEEIINSLSAIVSYQQTCSNELLKTNNFDILGYSLKLPIVLTRITLAIVDNFFEKPVFEEGFKKMLTRSNLQAMEVDHESKRITVAPDGRGHFRTITESLNACARNKECSCVIYVMKGVYEERVVIPKSLEHVFMYGDGPTQTIVTGINTRGPKIVTTPFRSASFVVKGKGFICKDMGFTAPAHIAGAPALVVFCDHAAFFNCKIDGKEGSLYAVAHRQFYGNCEIHGSVDIIKGDSATIIQNSRIIVKRQNSSIVPRKKVVSVQSRIDKHESTGFVIQNCTIIAEECETDDNNNSLVGSTCLGIPCNEYSRTVVLESFLGDVIRPRGWCKWSDNYGVDTSSFIEYDNRGIGAKTGRRVHWESYRKVSQNQKSEMMKFTADEFIQADKWLKNTGIPYESGLFFHK* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0349 555 CDD PMEI-like_3 63 202 - -
Psa3g0349 555 Pfam Plant invertase/pectin methylesterase inhibitor 60 172 IPR006501 GO:0004857
Psa3g0349 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 203 IPR035513 -
Psa3g0349 555 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 15 552 - -
Psa3g0349 555 SUPERFAMILY Pectin lyase-like 231 549 IPR011050 -
Psa3g0349 555 Gene3D - 230 553 IPR012334 -
Psa3g0349 555 PANTHER PECTINESTERASE 15 552 - -
Psa3g0349 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 202 IPR035513 -
Psa3g0349 555 Pfam Pectinesterase 233 537 IPR000070 GO:0030599|GO:0042545
Psa3g0349 555 SMART PMEI_2 56 198 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0349 Psa-Chr3 34147123 34149549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0349 59 552 Carbohydrate Esterase AT2G26450 33.524 1.55e-80 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0349 K01051 - gmx:102665007 617.461