Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0318 ATGGTAAAGGGAGGGAAGGTTAGTAGCAAAGGTAGTTTCAGGAAAAGGGCTAGGTCAAAGGGGGGTGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCGGGGAATGTGTCTGATTGTCCTGAGGATGATTGTTTTTCTTTAGATGGATGTGCGCCCGAGGATAGTTTTGATGGTTTTATAGAAGACGAGGATGCGGAAGTGGAGATTCGACCGGTGACGAAATTCAATAGATCGAGGGCTAAAACGGGTGTACGGCGTCAGGGGAAGAATGTGAGTAAAACTGCGCGGAAGAGACAGAGGATTACATATGCAGAAGAAATAGATGAGGAAGAAGAGGAAGAAGAAGATGAAGAAGTAGAAGAAGAAGATGATGATTATAATGGAGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAAAAGAAGTGGACGAGGTAGAAGAAGAAGAAGAAAAAGAAGAAGAAGTGGAAGAGGTAGAAGAAGAGGTGGAAGAGGTAGAGGTAGATGGAAATGACGAGGATGAGGATTTCAATTATGATGATGACGAATTTATACCTGAGGAAGAAGATTACACGGACGAAGAGGAAGAAGAAAGAAGTGGGCGGAAGAAGAAAAAGGAGGATTTTAGTTATGAAGATGAAGAATTTATACCGATGGAAGAAGAAAGAAGGGGCAGGAAGAAGAAAAAGGAGGATTTCAATTATGAAGACGAGGAATTTATACCGACTGAAGAAGATTACACAGATGAGGAGGAAGAAGAAACGAGGGGTATAACGAAGAAAAACAATGGCATTCAAATGGGAAAGAAGAAGACTTTGAAGAAAAGGGTTTCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTCGCTCTAGAGTTTCAAAGAAGACCAAGAGAAAGAGAAGAGGAAAGAGTGGAGGATCGAGGAGGAAAGTAAAGTGTGATGATGATGCAGACGATTTATTTGACAATGGCCCCGTCATCAGAACAAATAGCAGAAAGAAACCAGGCCATAAAAGGAGAAGGGTTCTCCTTGAAGATGCCAATTCCGGTTCCGATTGTGAGACTAGACCATCTGATTACGAGTTTACTATCTCTGAGGAAGAAAAAGAACAGGTGAGAGAAGCCATGGAGTTGTGCGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGAAAAATGAAGTGGTTGAAGTACATGAAGATCTACATCAGCAACGGAAGCCTCCAGCACAGAAGGGTAAGGAAAAGGTAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTCGAGGAGTTAAAAATTGAGGCGACAAAGCAGGTCTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAATACTAAACAGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTCTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCCACACGATCAGCAACAGCGCAAGAAGCAGTGATACAAGTGCCCGAGCGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGTTACATTGATCCATACGAGTCCGTTATTTGTTCAGAGTGCAATCTAGGTGGAGATGACGGCCTCATGCTACTCTGTGATATATGTGATTCTCCGGCACACACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCGGTCGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAACGCGCTGCTGATTTAAGAGATACTACCCAAAGCCAGCCTTCCAGACCGTCGCCTGTTCATATACGAGAAAGTATAGACCTGAACTTGATGTCATCATCACCATATACATCTTTTGGTCAAGGGTTTGGACATCTTTCATCCTCTAGATTTTCGGGCAGAAGTGCAGAAGGAGCTTCTCCGATGTCTGGTGGCGGGGCACCAACTGTATCAGAGAGACGACGGATACACCGTCAAATTCAGCAGCTACGATCAATGGATAGAATGACTTCTACGACTGGCAGAATTAACGGTATTTCAGCAACCAGTACAATAAGTAACTTGCATAGCTCGGAAATCGATCAAAGGAGGGAACTGACATCTCAATATACAAGGACACATGATGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTAATGCAGAACGGAGATCACTTCTCCACAAGAATAAGCAATTCAAGAAGGTCATTGGTTCAGGATTCAACCATGCTTTCCAACGCGACTATGAATGCGGTTATATGGCCTGGATTTTCGGGGACACGCACGTTATCAGATATTGAACCAATCCACCCGTTCAGCAGCAGATCAAACATTGTCACCGAGCGTAGTATTATTCCTCCGACTATCATAGAAGAAGATAACTTGCACATTGTAAAGGAACAGTTGCAGTCGATGGTTAAAATCCATCTCAAGAGATTGTCCCAAGATACCGATTTGGATTATAGTACATTCAAAGACATTGCAAGGAGTTCTACACATACCATACTTGCAGCTTGTGGACTCGAGCACAAGACAAGCGAGGTTTGTTCGGCGCCTCCACCGTCCGTATGTCCCCACGTTGAATTAATTGCTGGCGGACACACGAGTATGATGAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGCGATGTGGTTAAAAGGATTTTGGACACAAGAATGTCTTCACAGTGGTTAAGATTAGGAATTTAG 2775 0.4314 MVKGGKVSSKGSFRKRARSKGGGSDDSDEDYVVSDDAGNVSDCPEDDCFSLDGCAPEDSFDGFIEDEDAEVEIRPVTKFNRSRAKTGVRRQGKNVSKTARKRQRITYAEEIDEEEEEEEDEEVEEEDDDYNGEEEEEEEEEEKEVDEVEEEEEKEEEVEEVEEEVEEVEVDGNDEDEDFNYDDDEFIPEEEDYTDEEEEERSGRKKKKEDFSYEDEEFIPMEEERRGRKKKKEDFNYEDEEFIPTEEDYTDEEEEETRGITKKNNGIQMGKKKTLKKRVSATSSRGRKRSRSRVSKKTKRKRRGKSGGSRRKVKCDDDADDLFDNGPVIRTNSRKKPGHKRRRVLLEDANSGSDCETRPSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMKNEVVEVHEDLHQQRKPPAQKGKEKVEESQGRKGKEKVEELKIEATKQVCGICLSEENKRRVRGILNSCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPTRSATAQEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECNLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQERAADLRDTTQSQPSRPSPVHIRESIDLNLMSSSPYTSFGQGFGHLSSSRFSGRSAEGASPMSGGGAPTVSERRRIHRQIQQLRSMDRMTSTTGRINGISATSTISNLHSSEIDQRRELTSQYTRTHDVGTSYHTFFEERLGNNISPLMQNGDHFSTRISNSRRSLVQDSTMLSNATMNAVIWPGFSGTRTLSDIEPIHPFSSRSNIVTERSIIPPTIIEEDNLHIVKEQLQSMVKIHLKRLSQDTDLDYSTFKDIARSSTHTILAACGLEHKTSEVCSAPPPSVCPHVELIAGGHTSMMKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGI* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0318 924 MobiDBLite consensus disorder prediction 239 254 - -
Psa3g0318 924 SUPERFAMILY FYVE/PHD zinc finger 506 580 IPR011011 -
Psa3g0318 924 MobiDBLite consensus disorder prediction 110 197 - -
Psa3g0318 924 Pfam PHD-finger 534 580 IPR019787 -
Psa3g0318 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 582 IPR013083 -
Psa3g0318 924 MobiDBLite consensus disorder prediction 404 429 - -
Psa3g0318 924 MobiDBLite consensus disorder prediction 74 358 - -
Psa3g0318 924 ProSitePatterns Zinc finger RING-type signature. 464 473 IPR017907 -
Psa3g0318 924 SMART ring_2 445 486 IPR001841 -
Psa3g0318 924 ProSiteProfiles Zinc finger PHD-type profile. 532 581 IPR019787 -
Psa3g0318 924 MobiDBLite consensus disorder prediction 83 100 - -
Psa3g0318 924 CDD RING-HC_Topors 445 487 - -
Psa3g0318 924 PANTHER F18C1.6 PROTEIN 151 913 - -
Psa3g0318 924 MobiDBLite consensus disorder prediction 310 324 - -
Psa3g0318 924 MobiDBLite consensus disorder prediction 641 663 - -
Psa3g0318 924 SUPERFAMILY RING/U-box 444 493 - -
Psa3g0318 924 MobiDBLite consensus disorder prediction 269 309 - -
Psa3g0318 924 Pfam Ring finger domain 444 487 IPR001841 -
Psa3g0318 924 ProSiteProfiles Zinc finger RING-type profile. 445 487 IPR001841 -
Psa3g0318 924 MobiDBLite consensus disorder prediction 198 238 - -
Psa3g0318 924 PANTHER F18C1.6 PROTEIN 151 913 - -
Psa3g0318 924 Coils Coil 104 178 - -
Psa3g0318 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 501 IPR013083 -
Psa3g0318 924 SMART PHD_3 534 579 IPR001965 -
Psa3g0318 924 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0318 Psa-Chr3 32500081 32503869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0318 529 578 C2H2 Transcription Factor Family AT3G01460 46.154 5.40e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa3g0318 PHD 6.9e-09 CL0390