Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0303 ATGTCTAACACCAGCAACAATGTCGCTGGGGTTGACAACACATTCAGAAGAAAATTTGATCGTGAAGAGTATCTGGAACGAGCTCGGGAGCGTGAGAGACAGGAGGAAGAGGGTCGAGCAAAACCTAAAGGTAAAGGTCCTCCGGTGCAGAGGAAGCCCTTGAAACATAGGGATTTTGAAGTAAACCTTGAATCTCGCTTGGGAAAGACTCAGGTTGTAACGCCGGTTGCACCACTAAGTCAACAGGCTGGATATTTCTGCTCAGTTTGTGAGTGTGTGGTGAAGGACTCTGCAAACTACTTGGATCATATAAATGGAAAGAAACATCAAAGAGCATTGGGCATGTCAATGCGAGCTGAACGTTCTTCTCTCAAACAGGTTCAGGAACGATTTGAATCTCTTAAGAAACGTAAAGACATTGGAAGCTTTACAGAGCAAGATTTTGATGAAAGGATTTTAAAACAGCAACAAGAAGAGGAAGAAAGAAAACGACTGCGTCGGGAAAAGAAAAAAGAAAAGAAGATGGAGGCAGTAGAAGAACCAGAAATCGATCCTGATGTTGCTGCTTTGATGGGTTTTGGAGCATTCACGAAGATGGAGGCTAGGGTCGAAGCTTTAGAGAGTGAGATCTCGGAGGTACGATCAACTCTCATCGAGGTGCATAATTCGTTGATGACGAACCACACTCATTTGATAACAATGCTGGAAAAATGTCTGGGAAGGCACGATTGTCACGGGCAAGGTGACGTTTACGAACAGCTAACGATGTTGAAACAAGAAGGGATGGTGGAGGAGTATATCACTGAGTTTGATAATTTAACTGCTCAAATACCCAAACTCCCAGACAAACAGTTTATGGGATACTTTTTACATGGGTTGAAGGAGGAGATACGTGGAAAGGTTCGCAATTTAGCTGCCATGGGTGAGATAAATCGCACAAAAATTCTGCAAGTAACGAGAGCGGTGGAGGAGACAAAAGGAGGGAGTGGATTGGGCTACAATCGTGGGCCTAGATCGGGTGACGAGGAGGATGGGGAGGAAGAGGCCAAAATATTGGCGGTGGAGGTAGAAGATACCGATGATGAAGGGAGGGGAGAGTTCAGTGTGCTTAACTTGCACCACATAACACATGAGACTCAACACACAGTCAAATTCCAAGGTTACATTAGGGGAGTAGATGTGTTAATTTTGGTGGATAGTGGAGCTACACACAACTTCATCTCTAAAAAATTGGTGCATAAAATGGAGTGGCTAGTGGAAGCTACACCCCAAATGAAGGTTAAGTTGAGAGATGGGTTCTAA 1302 0.4432 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDFEVNLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRAERSSLKQVQERFESLKKRKDIGSFTEQDFDERILKQQQEEEERKRLRREKKKEKKMEAVEEPEIDPDVAALMGFGAFTKMEARVEALESEISEVRSTLIEVHNSLMTNHTHLITMLEKCLGRHDCHGQGDVYEQLTMLKQEGMVEEYITEFDNLTAQIPKLPDKQFMGYFLHGLKEEIRGKVRNLAAMGEINRTKILQVTRAVEETKGGSGLGYNRGPRSGDEEDGEEEAKILAVEVEDTDDEGRGEFSVLNLHHITHETQHTVKFQGYIRGVDVLILVDSGATHNFISKKLVHKMEWLVEATPQMKVKLRDGF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0303 433 Coils Coil 153 175 - -
Psa3g0303 433 SUPERFAMILY beta-beta-alpha zinc fingers 81 124 IPR036236 -
Psa3g0303 433 MobiDBLite consensus disorder prediction 20 54 - -
Psa3g0303 433 MobiDBLite consensus disorder prediction 327 346 - -
Psa3g0303 433 MobiDBLite consensus disorder prediction 20 44 - -
Psa3g0303 433 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Psa3g0303 433 Coils Coil 196 216 - -
Psa3g0303 433 Pfam Retroviral aspartyl protease 383 421 - -
Psa3g0303 433 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 7 197 IPR040107 GO:0000398|GO:0005681
Psa3g0303 433 MobiDBLite consensus disorder prediction 158 179 - -
Psa3g0303 433 Gene3D Acid Proteases 370 432 IPR021109 -
Psa3g0303 433 Gene3D Classic Zinc Finger 80 118 - -
Psa3g0303 433 Pfam Zinc-finger of C2H2 type 85 109 - -
Psa3g0303 433 CDD retropepsin_like 385 432 - -
Psa3g0303 433 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0303 Psa-Chr3 30231483 30236875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0303 4 147 C2H2 Transcription Factor Family AT3G05760 79.167 1.68e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0303 K12848 - gmx:100795833 298.13