Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0271 ATGAAGAAGTTGTCTAATAAATTGGGATCTCAATGGAAAAAAGATGAACTAGTGCGGTTTTATGAAGCGTATAGGAAGTATGGGAAGGATTGGGAGAAGGTGGCTGCAGATGTAGGCAGTAGATCTGTTGAGATGGTAGAGGCTCTTTACAACTGGAATCAGGAAGAGAGTGATAGTGAAAGAACTGAGACTATTAATGAAGAGATGACGCTCTCTAAATTGAAGAGAAGACGCGTTAATGTCAGTCATCCTCGAGCTATTGGGAAAAGGACACCTCGCGTTCCAGTTAACTACTCATATAGGAAGGATGATTGGGGAAATTATGTTTCATCTAATAAAACAAATATGGATTCAGCTTTTGATGCTAATGATGATGATGAAGTTGCACATGTTGAAACTGTTACATTAACCCGTGCTGCTCAAAGAGATGGCTCTCCCAAAGCATCTCAAATTCCATACAAAAGATCAGAACAGAAGTCCTCTCCTGTTCATAGGCGGATAAAACTGTTATATGCTATTTCAGTGGATGAAGACTGTTTGGAAGGTAGTATGGAAAGAAGGAACATGGAAGACATTAAAGATCACAAGAAAGGGGGAAATAATTACAGAAAGAAGGAACAAGGAGAAACTGTTAGAACCCATCTTCTTGATGGTGGTGGAGGAGCATGTAGTGGCACAAAAGAGGGACTTGATTTTTGTTTGAAGGAAAAGATAGATATTGATGCTATGAATTCCAAACTAAAGAAACGCCCAAGAGAATCATCTACCCGATTGAAGGAAGAAAGAATGACCGTTGATAATGATGAAAAGTTTGTTTTACCTGAAAGCACATCATCAAGCCAGAACAAAAGTGAAGCTAAATTACCACATTCGAACCAAAAGACTAGTCGTACAGTCTATGGATCTAAACTTGTAAAGGAATCAAAAGAGAAGATCCTCTCAACTGATAAAACAAGGAAGAGAAAGGGTAAATCCACGGTTTCAAAGGCTATAGATGAAGAGAATAACCCAGTGATTATGGAAAAACACATTGATCAGAATTTCAGCCTAGCAAAACAATTGAAGTTAGCCAGATCATTGGAAAGTTCTCTGCCTGGTGACCAGAAATATTTGAGAGTATCAACTTCAGATATTCCACTTGTGAGTGAAGTTAATTTAGCTTCTAAACAAAGAAGTAGACGTAAGAGGGGTTTTTTGAGAACGTTCATGCCTTCCGAGACCATATTGAAATGGCAACCTAAGATGTGTTTGACCTCTGTCCAAGATAAGGCAATATTTGTTAAGGATAAGCTATCAAATTGCTTGTCATCCTACATGGTTCGTAGATGGTGTGTGTTTGAATGGTTTTACAGTCCAATTGATTATCCATGGTTTTCCAAAAGGGAGTTCTCGGAGTACTTAAACCTTGTTGATCTAGGGAACATTACAAGGCTAACACGTGCTGAGTGGAGTGTCATAAGAAGTTCCCTTGGTAGACCTCGCAGGTTTTGTGAACGTTTTCTCCACGAAGAGAGACAAAAACTTGAACAGTATCGCAGATCTGTTAGGGAGTATTACACTGAAATAAGGGCTGGTAACAAGGATGGACTTCCAAGAGATTTACCTAAACCTTTTTATGTTGGACAACTAGTTATTGCTCTTAACTCAAAAACAGGAGAGATTCACGATGGAATTGTGCTTACAGTTGACCATGACAAGTGCATGGTTCAGTTTGACCATCCTGGATTGGGTGAAGAATTTATCATGGACATTGATTGCATGCCTTTGAATCCATTTGATAATATGCCAGAAACTTTGAGGATGCAGTTTGGGGTACTGTTACAGAAGAAATTGCCTATGGAGTTTCAAAACACAAGTGGTGACAAAGTAGAAAACCAAAATGACATTTTTAAGGATTCAGAGACACTAACTCAAGAACTAGTTGAATAG 1929 0.3867 MKKLSNKLGSQWKKDELVRFYEAYRKYGKDWEKVAADVGSRSVEMVEALYNWNQEESDSERTETINEEMTLSKLKRRRVNVSHPRAIGKRTPRVPVNYSYRKDDWGNYVSSNKTNMDSAFDANDDDEVAHVETVTLTRAAQRDGSPKASQIPYKRSEQKSSPVHRRIKLLYAISVDEDCLEGSMERRNMEDIKDHKKGGNNYRKKEQGETVRTHLLDGGGGACSGTKEGLDFCLKEKIDIDAMNSKLKKRPRESSTRLKEERMTVDNDEKFVLPESTSSSQNKSEAKLPHSNQKTSRTVYGSKLVKESKEKILSTDKTRKRKGKSTVSKAIDEENNPVIMEKHIDQNFSLAKQLKLARSLESSLPGDQKYLRVSTSDIPLVSEVNLASKQRSRRKRGFLRTFMPSETILKWQPKMCLTSVQDKAIFVKDKLSNCLSSYMVRRWCVFEWFYSPIDYPWFSKREFSEYLNLVDLGNITRLTRAEWSVIRSSLGRPRRFCERFLHEERQKLEQYRRSVREYYTEIRAGNKDGLPRDLPKPFYVGQLVIALNSKTGEIHDGIVLTVDHDKCMVQFDHPGLGEEFIMDIDCMPLNPFDNMPETLRMQFGVLLQKKLPMEFQNTSGDKVENQNDIFKDSETLTQELVE* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0271 642 PANTHER LIN-9 253 633 IPR010561 GO:0006351|GO:0017053
Psa3g0271 642 PANTHER LIN-9 2 54 IPR010561 GO:0006351|GO:0017053
Psa3g0271 642 PANTHER LIN-9 56 252 IPR010561 GO:0006351|GO:0017053
Psa3g0271 642 MobiDBLite consensus disorder prediction 138 160 - -
Psa3g0271 642 Gene3D - 1 67 - -
Psa3g0271 642 Pfam Myb-like DNA-binding domain 10 46 IPR001005 -
Psa3g0271 642 SMART DIRP_2 449 550 IPR033471 -
Psa3g0271 642 MobiDBLite consensus disorder prediction 271 300 - -
Psa3g0271 642 MobiDBLite consensus disorder prediction 245 300 - -
Psa3g0271 642 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 56 252 IPR028306 -
Psa3g0271 642 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 253 633 IPR028306 -
Psa3g0271 642 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 2 54 IPR028306 -
Psa3g0271 642 SUPERFAMILY Homeodomain-like 10 56 IPR009057 -
Psa3g0271 642 Coils Coil 501 521 - -
Psa3g0271 642 CDD SANT 12 46 IPR001005 -
Psa3g0271 642 MobiDBLite consensus disorder prediction 245 269 - -
Psa3g0271 642 Pfam DIRP 448 547 IPR033471 -
Psa3g0271 642 ProSiteProfiles SANT domain profile. 7 58 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0271 Psa-Chr3 27713632 27719058 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa3g0271 DIRP 5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0271 - - gmx:100816217 566.614