Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0245 ATGGATCATCAAGGGCATAACCAGAATCCGCCGATGGGGGTTGTCGGTAGTGGAGGTCAAATGCCGTATGGATCTAATCCATATCAGCCAAATCAAATGACCGGGGCACCTGGATCAGTTGTTACAGGGGGCATGCAATCAACTGGTCAACCTGCTGGAGCTCAAATGGGTCAGCATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAGCAGCAACTTCAGCAACAGCTCCAAGCTTTTTGGGCAAACCAGTACCAAGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCGGTCATATTTGCAAGGGCCTGTGAAATGTTCATATTGGAGTTAACCCTGCGTTCATGGAACCACACTGAAGAGAACAAAAGAAGGACGCTTCAGAAGAATGATATTGCAGCTGCAATCACAAGGACGGATATCTTTGATTTCCTGGTTGACATTGTGCCTCGCGAGGACCTGAAAGATGAAGTGCTGGCATCAATCCCAAGAGGAACAATGCCTGTTGGTGGACCTGCTGATGCTCTTAACTACTGCTACATGCCACCTCAACATGCCCCCCAAGTCGGAGCTGCTGGTGTCATAATGGGGAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAGCCTCATCCCTACATGGCACCACAAATGTGGCCACAGCCTCCAGACCAGCGACCACCATCTCCAGATCACTAG 777 0.4852 MDHQGHNQNPPMGVVGSGGQMPYGSNPYQPNQMTGAPGSVVTGGMQSTGQPAGAQMGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALNYCYMPPQHAPQVGAAGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPPDQRPPSPDH* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0245 258 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 258 - -
Psa3g0245 258 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 258 - -
Psa3g0245 258 Gene3D Histone, subunit A 61 177 IPR009072 GO:0046982
Psa3g0245 258 Pfam Core histone H2A/H2B/H3/H4 55 162 IPR007125 GO:0003677
Psa3g0245 258 SUPERFAMILY Histone-fold 62 171 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0245 Psa-Chr3 25458141 25461565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0245 1 245 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.789 4.53e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Psa3g0245 CBFD_NFYB_HMF 5.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0245 K08066 - gmx:100527803 401.364