Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0235 ATGAAAAACTATTCCCGCTTATTCATCCTCTTCATACTACCGCTAATCCTTCTTCTCTCCGCCACAAAAGCCCAAGCTCAAGCCCGAAACCAAACCAACGACTTCACAGATCCCAATTTCAACCAATTCAGCCCTTCCTTTGCTATAATCATAGTCATCTTAATCGCTGCTCTTTTTCTCATGGGCTTTTTCTCCATCTACATCCGTCGCTGCTCCGACTCACCTTCAACCAACGCCGGCCTCCCCGTCATGCACGGCCGTTTAGGTATCACTACTCGTGGACTAGATTCTTCAGTAATCGAGACTTTCCCGATTCTCGAATACTCCGAAGTCAAGATCCATAAGATCGGAAAAGAGGTGCTCGAGTGCGCTGTTTGTTTATGCGAGTTCGAAGACACCGAAACGCTGCGTTTGATTCCCAAGTGCGATCATGTTTTTCACACGGAGTGTATCGACGAGTGGTTATCTTTGCATACAACATGTCCAGTTTGTCGCGCGAATCTCGTTCCGGAACCCGCTGAGTCAGTTCACGGTGTTCCCGAGTCAAACAACGAGTCACAACAACAAGATATTGAAGCTCAAAACGACGCCGTTGAAGTACCGGCAGAGGAACGAAACGCGGAAGCTGATCCAGTTTTGGTTCCTCCGGAGGTGATTTCGTTGGAGAAAACGCTGAACAGGAATCGAACGCGTGGATCTCAATCGAACCGTGCGCGTCGTTTTCCGAAGTCGCACTCGACCGGTCATTCGTTGATTCAACCGGGTGAGAACACGGACCGGTTCACTTTGAAACTGCCCTTTGCGGTGAGGAAACAGTTAATGAACCGGCAGTTACAACGGACGAGTAGTTTGATTATGTTACCACGAGAAAGTAGCTCGAGGCATGGTTACCGAACCGGTGAAGGAAGTAGTAAAGGAAAAAGTTCGAGCTGGGTGGACCGGAGTTTTAAATCAGACCGGTGGGTTTTTACTAGAGCACCGTCGTTTTTGGCTAGAGCATTGTCGTTTAGGTCTCCAAAGCCAAAGGTCAATAATAGCGACGATGAAGGAACTTCTTCTGCTACTGCTCCTATCATGCCGTCATCTGCCGTTGACTCTGCCCGCCGTTAA 1110 0.4865 MKNYSRLFILFILPLILLLSATKAQAQARNQTNDFTDPNFNQFSPSFAIIIVILIAALFLMGFFSIYIRRCSDSPSTNAGLPVMHGRLGITTRGLDSSVIETFPILEYSEVKIHKIGKEVLECAVCLCEFEDTETLRLIPKCDHVFHTECIDEWLSLHTTCPVCRANLVPEPAESVHGVPESNNESQQQDIEAQNDAVEVPAEERNAEADPVLVPPEVISLEKTLNRNRTRGSQSNRARRFPKSHSTGHSLIQPGENTDRFTLKLPFAVRKQLMNRQLQRTSSLIMLPRESSSRHGYRTGEGSSKGKSSSWVDRSFKSDRWVFTRAPSFLARALSFRSPKPKVNNSDDEGTSSATAPIMPSSAVDSARR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0235 369 MobiDBLite consensus disorder prediction 280 310 - -
Psa3g0235 369 SUPERFAMILY RING/U-box 122 171 - -
Psa3g0235 369 SMART ring_2 123 164 IPR001841 -
Psa3g0235 369 MobiDBLite consensus disorder prediction 223 257 - -
Psa3g0235 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 170 IPR013083 -
Psa3g0235 369 CDD RING-H2_EL5_like 122 165 - -
Psa3g0235 369 Pfam Ring finger domain 122 165 IPR001841 -
Psa3g0235 369 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 311 - -
Psa3g0235 369 MobiDBLite consensus disorder prediction 334 369 - -
Psa3g0235 369 MobiDBLite consensus disorder prediction 175 194 - -
Psa3g0235 369 MobiDBLite consensus disorder prediction 339 360 - -
Psa3g0235 369 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Psa3g0235 369 PANTHER RING FINGER DOMAIN-CONTAINING 8 311 - -
Psa3g0235 369 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0235 Psa-Chr3 24976284 24978603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0235 1 333 Rapid Response to Elicitors AT3G05200 44.186 4.62e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0235 K10664 - gmx:100781706 468.003