Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0197 ATGGCCTCACAGCAACACGACACCGTTTTCCCCGAAGAAGACATGGACGACGACGAAGACGAATTTCACGAATACGAAGAAGATGAAGAAGACGACGACGTTTTAGTCGACGAAGAAGAAAACGATCCTCCTTCTTCTTCCCGCTCCGTTCCCTCCGTCACAGTCGCCGTCCCCGGTTCCGTCATCTCCAACGGCGTTATCAGACCCCCAATTTTAACTCCAACCGCAACCACCATCGTCTTCGCCGATTCCTTCCCCTCCGATTCAAAACGCCAACGTATAGATCAAATTGAAGAGAAAAAACCTCTCGAAGATTCACGCAAGCTTTTTCAGCGCTTATGGACAGACGAAGACGAGATGGAGCTCTTGCAAGGTTTCCTCGACTACACAACGCAGAGAGGATCTTCTCACCACAACGACACAGCTCAATTCTACGACCAAATCAAATCCAAACTCCAACTCGATTTCAACAAGAATCAACTCGTTGAGAAGATCCGAAGGTTGAAGAAGAAATACCGAAACGTTCTGAACAAAATCAGCTCCGGCAAGGAATTCGTCTTCAAAACCGCTCACGATCAAGCTACTTTCGAAATCTCGCGCAAGATCTGGAACAACGTCGCGCCGGTTCCAGGTGATGTTGCCATAGACGACGACGAAATCAACCTGAATCCAAGTCCGAACCCTAACCTCAATTTCAGTCCGGTAATTCTCAAGGCCGAGGCGAATTCGAACACGAGGAAGCGTTCACGGCCTCGATCCGTTATCAGAACGTTCGAGAAACGCGAATCTATTGATTTATCAATTAGAGATCGTGATTATCTCAATATCAACCTCAACAATCCTAATCCAAATCCTAATCCTAATCCTCTTCCAATTCCTATTCCTATTCCAATTCCTCATCCTAATCCTAATCCTTACACTACTACTACAGCTACTGTTAATGCCGCTATAACACCTACTATTACTACTACTACTACTCCTAATGCTAATACTGCAATTAATGCTAATAATTATAGTAATAATTGCAGTAGCATTGGGAATAATGTTGCTGGTGTGATTGAAGAAACAGTGAGGAGTTGTTTATCGCCGGTGTTGAAGGAATTGGTAGCTGGTGCGGGTGCGTCTGCGATGGGAGGATCGGTTGGAGGAGCGCGAGGAGGCTTCGGTTTCTCGATGAATCCGGTGCCGTTTCAGTTCATGAATTTCGGTTTCGGAGGCGGCAGCGGCGGAGAAATTGTGGATGAGAAATGGCGGAAGCAACAGATTTTGGAATTGGAAGTGTATTCGAAGAGATTGGAATTGGTTCAGGATCAGATCAAAGCATCTCTTAACGAGTTGCGATCAATTGGTGGAACAGGAGAATGA 1365 0.4593 MASQQHDTVFPEEDMDDDEDEFHEYEEDEEDDDVLVDEEENDPPSSSRSVPSVTVAVPGSVISNGVIRPPILTPTATTIVFADSFPSDSKRQRIDQIEEKKPLEDSRKLFQRLWTDEDEMELLQGFLDYTTQRGSSHHNDTAQFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKISSGKEFVFKTAHDQATFEISRKIWNNVAPVPGDVAIDDDEINLNPSPNPNLNFSPVILKAEANSNTRKRSRPRSVIRTFEKRESIDLSIRDRDYLNINLNNPNPNPNPNPLPIPIPIPIPHPNPNPYTTTTATVNAAITPTITTTTTPNANTAINANNYSNNCSSIGNNVAGVIEETVRSCLSPVLKELVAGAGASAMGGSVGGARGGFGFSMNPVPFQFMNFGFGGGSGGEIVDEKWRKQQILELEVYSKRLELVQDQIKASLNELRSIGGTGE* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0197 454 Coils Coil 425 445 - -
Psa3g0197 454 MobiDBLite consensus disorder prediction 11 40 - -
Psa3g0197 454 Coils Coil 158 178 - -
Psa3g0197 454 MobiDBLite consensus disorder prediction 1 52 - -
Psa3g0197 454 PANTHER BNAANNG10740D PROTEIN-RELATED 1 450 IPR007592 GO:0006355
Psa3g0197 454 Pfam Protein of unknown function, DUF573 110 204 IPR007592 GO:0006355
Psa3g0197 454 PANTHER BNAANNG10740D PROTEIN 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0197 Psa-Chr3 22217571 22219812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0197 1 449 GeBP Transcription Factor Family AT5G28040 39.832 2.70e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Psa3g0197 DUF573 1.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0197 - - gmx:100779712 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0197 3 22217571 22219812 Psa6g3371 6 289875190 289876227 PCT