Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0188 ATGCATGGTAGAGTAGAGATGGTAGCAACAAACATGTTGGATGAAGGAGTATCAAAGCAGTTTGAGTTTCAGCCATTGACGATGACTACTACTACTACTAGTCTTCTTCATGATCAATTCTCACTTCAAGCTCAATCTAATAACCTCTTCTACCCATCAATATTATCATCATTGCCGCACCAATCTTCTAAACAACATCACAATCACACCACCACCACCTTTAATTCTTCATTTAACTTCCATCCTTTACCACCATCACACTTGATCGATTCCGAATGGACTAACGACGAACTTCTTGCACTCTTCAAAATCAGATCTACCATTGATAATTGCTTCCCAGATCACCTCACATGGGACCATGTCTCAAGGAAGCTTGCAGAAGCTGGGTTTAAGAAGAGTGCTGACAAGTGCAAGGAGAAGTTTGAAGATGAGAACACATCATTATTGAAGATCCATAATCATGATGATTTTGCTATTGAGCTTCAAAGTCTGTATCAAACTTGTTGTGATGATGAACCTGATGAAAAAGAGAAGACTCATCACGACGAAGAAAATTCAAGAGATGACGATAACATTGACATTGTAGTGACCAAACAATTTAACGACAAGGTGGTGATGGAAAAATCAAAGGTTGACAGAAACAGAAAGAGGAAGAGTCGGCGGCGCGAGAGATTTGAAATGCTGAAGTGTTTCTGCGAGAATGTGGTGAACAAAATGATGGCACAACAAGAAGAAACACACAATAAGCTAATTCAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCCAGAGAAGAAGAATGGAAAAAGCAAGAAACCGAAAGGATGAACATGATGACACAAGAACAAGCTGTTTCAAATCATAGACAAGCCACCATAATTGATTTCTTGAAAAACCATCTTTCCACAAATGAAAACAACATCGTCAACAACAAAACTACAAAAGCACGTTCTTCTTCTCAACAATCGCACCCACAAAACCCTAGCTCGAGCGAAACAGCATTACTAGTAGTTCCTTCAACTTGTTCCAATAACAACAATGATAACAACAGAAAGAATCCAGTGTTAGAGGACAAGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTGATAAACCTCAAGTGTACTACAAGTGCAATGAACAGAAGGATGAACAAGAAGGAAAAAAACAGTGATAACAACAAGGGACCTGTGTGGGAGAGAATCTCTGAAGGGATGTCAGAGTTGGGGTACAAGAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAAAACATAAACAAGTATTTTAGAAAAACAAAGGACGGTGTTGTGAATAAGAAGAAAAGGAGAATGGATTCAAGGACTTGTCCTTATTTTTATCAACTAACTTCTTTGTATAATCAGCAGCAGCAGCATGGAAAAGTGATTGCTCCTCAAAATCAATTAACATTCAATTCAGCTGGCCAAGTTGATGATCAACATCAACCCCAAGTTCAATCTTATGATTTTTCATAG 1494 0.3869 MHGRVEMVATNMLDEGVSKQFEFQPLTMTTTTTSLLHDQFSLQAQSNNLFYPSILSSLPHQSSKQHHNHTTTTFNSSFNFHPLPPSHLIDSEWTNDELLALFKIRSTIDNCFPDHLTWDHVSRKLAEAGFKKSADKCKEKFEDENTSLLKIHNHDDFAIELQSLYQTCCDDEPDEKEKTHHDEENSRDDDNIDIVVTKQFNDKVVMEKSKVDRNRKRKSRRRERFEMLKCFCENVVNKMMAQQEETHNKLIQDMLKRDQEKLAREEEWKKQETERMNMMTQEQAVSNHRQATIIDFLKNHLSTNENNIVNNKTTKARSSSQQSHPQNPSSSETALLVVPSTCSNNNNDNNRKNPVLEDKRRWPRDEVLALINLKCTTSAMNRRMNKKEKNSDNNKGPVWERISEGMSELGYKRSAKRCKEKWENINKYFRKTKDGVVNKKKRRMDSRTCPYFYQLTSLYNQQQQHGKVIAPQNQLTFNSAGQVDDQHQPQVQSYDFS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0188 497 Pfam Myb/SANT-like DNA-binding domain 91 151 IPR044822 -
Psa3g0188 497 Pfam Myb/SANT-like DNA-binding domain 360 457 IPR044822 -
Psa3g0188 497 CDD GT1 360 433 - -
Psa3g0188 497 PANTHER - 318 487 - -
Psa3g0188 497 PANTHER - 23 303 - -
Psa3g0188 497 SMART sant 89 147 IPR001005 -
Psa3g0188 497 SMART sant 358 428 IPR001005 -
Psa3g0188 497 MobiDBLite consensus disorder prediction 172 192 - -
Psa3g0188 497 ProSiteProfiles Myb-like domain profile. 359 426 IPR001005 -
Psa3g0188 497 MobiDBLite consensus disorder prediction 313 332 - -
Psa3g0188 497 Gene3D - 362 431 - -
Psa3g0188 497 Gene3D - 93 148 - -
Psa3g0188 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 318 487 - -
Psa3g0188 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 23 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0188 Psa-Chr3 21892103 21894220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0188 225 461 Trihelix Transcription Factor Family AT5G28300 47.191 5.40e-63 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa3g0188 Myb_DNA-bind_4 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0188 - - mtr:MTR_7g114860 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0188 3 21892103 21894220 Psa3g0188 3 21892103 21894220 ECH