Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0163 ATGAGGATTATGATTAAGGGAGGTGTTTGGAAAAACACCGAGGATGAAATTCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAGTGGGCTCGTATTTCTTCATTGCTTGTTCGTAAATCTGCCAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAGACTGAATGGACTAGAGAAGAGGATGAGAAGTTGCTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACTATTGCTCCCATTGTTGGTCGTACTCCTTCGCAGTGTCTTGAACGATATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGATAATTATGAACCTGGGGATGATCCTAGGAAATTGCGTCCGGGGGAGATTGATCCGAATCCTGAGTCGAAGCCTGCACGACCTGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCCGAAGCACGTGCTCGGTTGGCTAACACGAAAGGTAAGAAAGCGAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCTCTGCAGAAGAAAAGAGAATTGAAGGCTGCTGGAATTGATATTAGGCAGAGGAGAAGGAAAAGGAGAGGAATTGACTATAATGCAGAAATTCCCTTTGAGAAGAGGCCTCCTCCGGGTTACTTTGATGTTGCTGATGAGGATAGGCCGGTGGAGCAGCCCGCATTCCCTACTACTATTGAAGAACTTGAGGGGAAAAGAAGGGTCGATGTTGAGGCGCAGTTGAGAAAACAAGATGTTGCGAGGAATAAAATTGCAGAGAGGCAAGATGCCCCAGCTGCTATTCTTCACGCCAACAAGCTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCTAGTGACCTTATGAGCAGCGAAGAACTCACCGAAGGCAGCAGTGCTACGCGTGCTCTTCTCTCTAATTATCCACAGACACCCAACCAAGCAATGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTAGTAAAAGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGTTGAGGGAGTCTCAGACACCGTTGTTGGGAGGAGAAAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAAAAAAAGGAAATTCACACTCCAAACCCACTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCGAGAAGTGGTATGACACCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCGAAGGGAACTCCTCTAAGGGACGAGCTGCATATCAATGAAGGTTTGGAGATGCATGACAGTGCTAAACTTGAGCTACGTAGACAAGCTGATATGAAAAGAAGTTTGCGCTCTGGTTTAAGCAGCCTTCCACAACCCAAAAACGAGTACCAAATAGTGATGCAACCAGTTCAAGAAGATGCTGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCCGATAGAATGGCTAGAGAGAAGGCGGAAGAAGAGGCACGGCAGCAGGCATTACTTAGGAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTCTGGAGCTTATTAGAAACTCCTTGATAAGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACTCTGATTGAGCAAGCTGATGAGATGATAAGAAAGGAGCTTCTAACTTTACTGGAGCATGACAATGCCAAGTATCCTCTTGAGGAGATAGCAAATAAGGAGAGAAAGAAAGGAGCCAAACGAGCAGCAAATGGGCCTGCTATCCCTGTCATAGAAGATTTTCAGGAGGATGAGATCAAAGCTGCTGGTATGTTGATAAAAGATGAAGCCCAGTATCTCCGTGCGGCAATGGGGCATGAAAATGATTCCCTTGATGAATTTGTTGAAGCGCATACCACTTGCATTAATGATTTAATGTACTTTTCAACTCGTAATGCCTATGGTCTATCAAGTGTTGCTGGAAATATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAGTAAGTTGGATGATGGTAAGGAGAAAATGATTCGACTTGAGAAGAAGGTTACAGTACTCACACAAGGGTATGAGATGAGATCAAAAAAAAGTCTTTGGCCGCAGATTGAGGCCACTTTCAAGCAGATGGACGTCGCTGCAACAGAATTTGAGTGCTTTCAGGCTTTAAAAAAGCAGGAGCAGTTAGCAGCATCACATAGGATAAACAATCTTTGGTCTGAAGTTCAGAAGCAAAAGGAACTTGAGAGAACTTTACAGAAGAGATATGGAGATCTTATGGCAGAGCTGGAAAGGACACAAAATGTAATGGAGCAATTCAGGGTACAAGCGCAGCAGAAGGAAGAAATTGAAGCAAAGAATCATGCAATAGAAGAGGTACAAGCACAGCAGAAGGAAGAAATTGAAGCAAAGAATCATGCAATAGAAGAGGTACAAGCACAACAGCAAGAAGAAACTGAAGCAAATAATCATGCAATAGAAGAGGTACAAGCACAACAGCAAGAAGAAACTGAAGCAAAGAAACATGTACTCGAGAGTACTGAAGCCAAAGCTGATGAAATTAATGTAGAGGGCACAGAAAATTGTGAAGCGGCACCCCCCTCAGCTGAGCAGCAAATAGCCACAGTGCAAGATCAGGCTACTTCTAGCTCCAAAGTTGATATGGATGTGGGTACATTGCCAGATGCACCTGCTGCAGAAGATGAGAGTGCACAAGTTGTAGAAGGCAAAAACATTGGAAGTGATATTGATAACAGAGAGACAACCGTTGATATGAGTGCCGCAGTTGAAATAAAAAGTAATGAGGGAAATGGGGAAGGTCAAAATGTTGAGAATCCTGACGAGGTTACAGAAGCTGCAAACCAACCTGATAGTAGCATCAAAGAAACTACCCCGCATGAGGACATGCAAGTTGCTGATGGTAAAGAAGATGAAGCAAATTAG 3042 0.4418 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRPVEQPAFPTTIEELEGKRRVDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLMSSEELTEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKRDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHTPNPLLTPSATPGSAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEGLEMHDSAKLELRRQADMKRSLRSGLSSLPQPKNEYQIVMQPVQEDAEEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRELPRPPPASLELIRNSLIRADGDKSSFVPPTLIEQADEMIRKELLTLLEHDNAKYPLEEIANKERKKGAKRAANGPAIPVIEDFQEDEIKAAGMLIKDEAQYLRAAMGHENDSLDEFVEAHTTCINDLMYFSTRNAYGLSSVAGNMEKLAALQNEFENVRSKLDDGKEKMIRLEKKVTVLTQGYEMRSKKSLWPQIEATFKQMDVAATEFECFQALKKQEQLAASHRINNLWSEVQKQKELERTLQKRYGDLMAELERTQNVMEQFRVQAQQKEEIEAKNHAIEEVQAQQKEEIEAKNHAIEEVQAQQQEETEANNHAIEEVQAQQQEETEAKKHVLESTEAKADEINVEGTENCEAAPPSAEQQIATVQDQATSSSKVDMDVGTLPDAPAAEDESAQVVEGKNIGSDIDNRETTVDMSAAVEIKSNEGNGEGQNVENPDEVTEAANQPDSSIKETTPHEDMQVADGKEDEAN* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0163 1013 CDD SANT_CDC5_II 55 106 - -
Psa3g0163 1013 MobiDBLite consensus disorder prediction 338 357 - -
Psa3g0163 1013 MobiDBLite consensus disorder prediction 968 993 - -
Psa3g0163 1013 MobiDBLite consensus disorder prediction 893 1013 - -
Psa3g0163 1013 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 798 - -
Psa3g0163 1013 MobiDBLite consensus disorder prediction 994 1013 - -
Psa3g0163 1013 Coils Coil 167 187 - -
Psa3g0163 1013 Pfam Myb-like DNA-binding domain 10 70 - -
Psa3g0163 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Psa3g0163 1013 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Psa3g0163 1013 SMART sant 6 55 IPR001005 -
Psa3g0163 1013 SMART sant 58 105 IPR001005 -
Psa3g0163 1013 MobiDBLite consensus disorder prediction 113 150 - -
Psa3g0163 1013 MobiDBLite consensus disorder prediction 898 921 - -
Psa3g0163 1013 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Psa3g0163 1013 Coils Coil 796 861 - -
Psa3g0163 1013 Gene3D - 5 58 - -
Psa3g0163 1013 Gene3D - 59 114 - -
Psa3g0163 1013 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Psa3g0163 1013 MobiDBLite consensus disorder prediction 338 355 - -
Psa3g0163 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Psa3g0163 1013 Coils Coil 689 716 - -
Psa3g0163 1013 CDD SANT 10 53 IPR001005 -
Psa3g0163 1013 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0163 Psa-Chr3 18875356 18883577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0163 1 833 MYB-Related Transcription Factor Family AT1G09770 74.761 0.0 1230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g0163 Myb_Cef 1.1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0163 K12860 - gmx:100790369 1455.27