Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0149 ATGCATTGTGTTTATGTGACGGTTATGGCGGCGAAAATAGAGGAAAAAACCGCATCGGAATTGAAGGAACGGTTATGGAAAATTGTGAAGACTATTGTTGACTCCGATGACTATACTTTGCAAAACGCCGATGATGCAATCGCTGCTCTTTCTTCTCTCAAGGATTTCAAGTCTCGTTCGAATTCGAATCCGAATGGAACGAACTCTTTTGACGATAAATTGGACCAATTTGCCCCTCCGACTGAATTTCGCTGCCCTATTTCTACTCAGTTGATGATCGATCCTGTTATCTTGTCCACCGGACAGACTTATGATCGGCCATTTATCCAGAGGTGGTTGAATGAAGGCAATAGAACATGCCCTCAAACCCAGCAAGTTCTATCTCACACAATTCTTACACCGAATTACTTGGTTCGTGACATGATTGCGCATTGGTGTAAGGAGCGTGGACTTGAGCTACCACAGCCTACTCGTGATACGGACGATGTTGTGACTGATGCTGACAGAGACCGTTTAAATGCGCTGCTTCATAAGTTGTCATTGTCTGTTGCTGATCAGAAAGCAGCTGCGAAAGAGCTTCGTTTGTTAACAAAGCGAACACCTTCGTTTCGAACCCTTTTTAAGGAGTCTGGTGATGTGATCACGCAGCTGCTTCGTCCGTTATCGCCAGGCGGTGCTTGTCCTCACCCTGATCTTCAAGAGGATTTGATCACAACTGTTTTGAATCTCTCAATTCTTGACGATAATAAGAAAGTTTTTGCAGAGGATCCAACTCTCATTAACCTGCTGATTGATGCCTTGAAATGGGGAACCATTTCAACGAAAAGCAATGCTGCTGCAGCTATTTTCACATTATCAGCTCTTGATTCCAACAAGTTCATTATCGGAAAATCTGGAGCTATCAAACATTTGCTTGGCCTTCTAGACGAGGGACATACATTTGCCATGAAAGATGCTGCGTCAGCCATATATAACCTATGTCTGGTGCACGATAATAAAGAGAGGACCGTGCGAGAAGGGGCGGTTAAGGTCATTTTGAACAAGATCATGAACCACATTCTAGTTGACGAGCTGTTGGCTATACTGGCACTCCTCTCCTGTCATCCTGATGCTGTTGAAGAAATGGGCAATCGCAACGCTGTTCCTTTCTTAATGAGGAATATAAGGGAAAGCACATCAGAAAGATGCAAGGAAAATTGCGTTGCAATTCTGTATACAATCTGTTATAGTCGTAGAACAAAGTTGAAGGAAATCAAAGAAGAAGAAAAGGCCAATGGCACACTGTCTATGCTAGCACAATGCGGAACTTCAAGAGCAAAAAGGAAGGCCAACAGTATTCTCGAGCGGCTCAACAGATCTCAATCCTTAACTCACACTGCTTAG 1383 0.436 MHCVYVTVMAAKIEEKTASELKERLWKIVKTIVDSDDYTLQNADDAIAALSSLKDFKSRSNSNPNGTNSFDDKLDQFAPPTEFRCPISTQLMIDPVILSTGQTYDRPFIQRWLNEGNRTCPQTQQVLSHTILTPNYLVRDMIAHWCKERGLELPQPTRDTDDVVTDADRDRLNALLHKLSLSVADQKAAAKELRLLTKRTPSFRTLFKESGDVITQLLRPLSPGGACPHPDLQEDLITTVLNLSILDDNKKVFAEDPTLINLLIDALKWGTISTKSNAAAAIFTLSALDSNKFIIGKSGAIKHLLGLLDEGHTFAMKDAASAIYNLCLVHDNKERTVREGAVKVILNKIMNHILVDELLAILALLSCHPDAVEEMGNRNAVPFLMRNIRESTSERCKENCVAILYTICYSRRTKLKEIKEEEKANGTLSMLAQCGTSRAKRKANSILERLNRSQSLTHTA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0149 460 PANTHER U BOX DOMAIN-CONTAINING 13 458 - -
Psa3g0149 460 Gene3D - 354 458 IPR011989 -
Psa3g0149 460 SMART Ubox_2 82 145 IPR003613 GO:0004842|GO:0016567
Psa3g0149 460 CDD RING-Ubox_PUB 83 125 IPR045210 -
Psa3g0149 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 13 458 - -
Psa3g0149 460 ProSiteProfiles U-box domain profile. 78 152 IPR003613 GO:0004842|GO:0016567
Psa3g0149 460 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Psa3g0149 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 152 IPR013083 -
Psa3g0149 460 Pfam U-box domain 80 149 IPR003613 GO:0004842|GO:0016567
Psa3g0149 460 Gene3D - 207 353 IPR011989 -
Psa3g0149 460 SUPERFAMILY RING/U-box 73 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0149 Psa-Chr3 17625367 17628470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0149 141 460 U-box Gene Family AT3G07360 56.135 1.57e-115 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0149 - - gmx:100806619 614.379