Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0146 ATGCATAGAATAATATCCACGCCGGCGTCTAAATTCCGCCAATTCCGGCGACTCCGCTCCGGACATACTACTATAACCGCGGCGAGCGACGAGGAACAAGCTTCACATATCTTATTATGGCGGTACCAGATCTTGGATCCAGACAGCGACTTTGTTGCCTATTGGAACAGGGTTTTCCTCGTCACCAGTCTTCTCGCGCTTTTCATCGATCCTCTTTACTTCTTCCTCCCCACCGTTGGTGGTCCTGCTTGCTTGACGGCGGATCCCCAACTCAGCATCTTCCTCACTGTTCTACGTTCATTTGCTGATCTCTTCTATGTTCTCCACATGGTTATGAAGTTTCGTACTGCGTTTGTTGCTCCTAATTCCAGAATTGTTGGCCGTGGTGACCTTGTTATGGATCCCAGACAAATTGCAATGCGGTATTTGAAGTCTGATTTTGTTATTGACCTTGCTGCCACCATTCCATTACCTCAGATTGTTATTTGGTTAGTGATTCCAGCTAGTAGGGGAAGAAAAACTGATCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTACGTTCCTAGGCTCTTTCTCATCTTTCCTTTGAACCAGCGTATACAAAAAACAACGGGTGTTATAGCCAAGACTCCCTGGGTTGGTGCTGCATACAATCTTATTCTCTACATGCTAGCTAGCCATGTTACAGGAGCAACTTGGTACCTATCATCAATAGGAAGGCAATTCAATTGCTGGAAAACACAATGTCAATTGGAAAACCGATCGCATTCCCTTTCTTGCTTGCCAAGTTTTCTGGACTGTAATAGTTTGAATCTCCCGGAGAGACAGTACTGGCTAAATATCACTCGTGTTATTACCAAGTGTGATGCAAAGAGCAAGATCAACATCAAATACAAGTTTGGGATGTTTGCAGATGCTTTCCTCAATGATGTTGTCACTACTAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTAAGAAATTTAAGTTCTTATGGACAAAATTTGGACACCACCACATACCTTTTAGAGACACTATTTTGCATCATCTTATGCATTGCTGGATTAGTACTCTTCTCACTTTTGATTGGAAACATGCAGACATACTTGCAATCGATGACAGCTAGATTAGATGAATGGAGAATTCGGAAAAGGGATACAGAGGAATGGATGAGGCATCGACAGCTACCTCAAAATTTGCAGGAACGCGTTCGTCGCTTTGTTCAGTATAAATGGTTAGCTACAAGAGGAGTAGATGAAGAGGCCATACTACTTTCCTTACCTTTGGATCTCCGCAGAGAAATCCAACATCACTTATGTCTATCTCTAGTGCGACGTGTGCCATTCTTCTCACAAATGGATGATCAACTACTTGATGCAATCTGCGAACGCCTTGTATCATCATTAAGCACGCAGGGAACATATATATTTCAAGAGGATGATCCAGTAGATGAAATGTTGTTTATCATTAGAGGGACATTAGAGAGTTCAACAACCAATGGAGGAAGGTACGGGTTCTTCAATTCAATCACACTAAGACCAGGAGACTTTTGTGGAGAAGAATTGTTAACATGGGCTTTATTACCAAACTCAACTCTCAATTTACCTGCTTCTACTCGTACCGTAAAAGCTATTACCGAAGTAGAAGCTTTTGCCCTACAAGCAGAGGATCTAAAATTCGTGGCAAGTCAGTTCAAACGTCTTCATAGCAAGAAACTTCAGCATGCTTTTAGGTATTATTCGCAACAATGGAGAACATGGAGTTCATGTTTCATACAAGCAGCATGGAGAAAGCATCAGAAAAGAAAGGCAACAAGAGAGTTGTCGATTAAGGAAGGGATTTACTACATGGTGGATCCTGAGATTGAGGAATCGTCAGGGCATGGCAAAAATTTTAATAATCTTGGGGCTACTGTTTTGGCTTCAAGATTTGCTGCAAATACCAAGAAAGGGAATAGTAAGATTCAAGGTAGTGATCCTGTGCCGCAGTTGTTTAAACCTCATGAACCTGATTTCTCTCGAGACCACGATAATGTTTAG 2055 0.419 MHRIISTPASKFRQFRRLRSGHTTITAASDEEQASHILLWRYQILDPDSDFVAYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLTADPQLSIFLTVLRSFADLFYVLHMVMKFRTAFVAPNSRIVGRGDLVMDPRQIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRGRKTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWVGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKTQCQLENRSHSLSCLPSFLDCNSLNLPERQYWLNITRVITKCDAKSKINIKYKFGMFADAFLNDVVTTSFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETLFCIILCIAGLVLFSLLIGNMQTYLQSMTARLDEWRIRKRDTEEWMRHRQLPQNLQERVRRFVQYKWLATRGVDEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFQEDDPVDEMLFIIRGTLESSTTNGGRYGFFNSITLRPGDFCGEELLTWALLPNSTLNLPASTRTVKAITEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWSSCFIQAAWRKHQKRKATRELSIKEGIYYMVDPEIEESSGHGKNFNNLGATVLASRFAANTKKGNSKIQGSDPVPQLFKPHEPDFSRDHDNV* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0146 684 Pfam Ion transport protein 54 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa3g0146 684 Gene3D Helix hairpin bin 378 445 - -
Psa3g0146 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 33 679 - -
Psa3g0146 684 SMART cnmp_10 454 585 IPR000595 -
Psa3g0146 684 SUPERFAMILY Voltage-gated potassium channels 46 376 - -
Psa3g0146 684 MobiDBLite consensus disorder prediction 656 684 - -
Psa3g0146 684 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Psa3g0146 684 CDD CAP_ED 454 585 IPR000595 -
Psa3g0146 684 SUPERFAMILY cAMP-binding domain-like 385 579 IPR018490 -
Psa3g0146 684 Gene3D Jelly Rolls 452 572 IPR014710 -
Psa3g0146 684 Gene3D - 59 377 - -
Psa3g0146 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 33 679 - -
Psa3g0146 684 Pfam Cyclic nucleotide-binding domain 477 565 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0146 Psa-Chr3 17290659 17295233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0146 28 684 Ion Channels AT5G14870 66.813 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0146 K05391 - gmx:100802812 1212.98