Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0141 ATGCTGAAACAGAAGGAGGCTAGTTGGCATGTTAGGATGTTGACGCGTGAGATTAGGAAGTCGTTGGATAAGCATACGATATTGTATACTACGCTTGTTGAGCTTTCTAAGGCTTTGGATTTGCATAATTGTGCGGTTTGGATGCCGGATGAGGATATCAGGGTGATGCATTTGACTCATGAGTTGAAGCCGAATCCGGGGAGGAATTTTCATAGTTCTATTTCTGTTAATGATTTGGATGTGTTGGAGATAAGAAAGAGCAAGAGTGTGTTGGTTTTGAGGCTTGATTCTGAGCTTGGAGCTGCGAGTAGTGGTGGATCTGAGGATTCGGGTGCTGTAGCAGCCATTCGTATGCCGATACTTCATGTTTCAAATTTCAAAGGAGGGACGCCGGAGTTTGTCGAGACATCTTATGCTATATTGGTTTTGGTTCTTCCGAAATCAAACTCTAGGGTTTGGACCTCCCCTGAGATGGAGATAGTGGAAGTTGTTGCTGACCAGGTGGCTGTGGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGATCATGAGAGAGAAACTTGCAGAACAAAACCGGGCGCTGCAGCAGGCACAAAAGTACGCGATGATGGCTAGTCAGGCAAGGAGCTCGTTTGAGAAAGTGATGAGCCACGGAATGCGGAGACCTATGCATTCAATCCTGGGATTGCTTTCAATGTTTCAAGAGGATAATATAAGATCCGAACAGAAGATTGTTGTTGACACAATATTGAAAGTTAGCAATTCGCTCTCACGTTTGATAAACGATGTCATGGAGATTTCGGCTAACGACAAAGGAAGTTTCCAGTTAGAGTTGAAACATTTCCATCTACATTCCATGATGAGGGAAGCTTCTTGCATTGCAAAGTGTTTGTGTGTATATAAAGGCTTTCGTCTTGAAATTGATGTGCAGAGGTCTTTGCCTGATATGGTAATCGGCGACGAGGCAAGGTCTTTTCAAATAATTTTGCACATGATTGGCTATTTATTGAACTTATACGATAGAGGGACTCTCGTTTTTCAAGTTTCTCTTGAAAGCGATACTGGTGTGGATATGGATGATAGAAGTTCCGGAATATGGAGATCAAGTTTGCAAAATGATAATGTATATATAAAATTTAATTTCCAAATAACCGGTACTAGTTCACATTCAGACGAATCGATTTTAACCAGTAAGATGCACCACGGCAATGTACCTAAGGAGGGCCTGAGCTTTAGCATTTGCAAAACACTTGTGCAGATGATGCAAGGTAATATCTGGATATCACCAAACTCTCTAGGTTTGGCACAAGGCGTGACAGTTCTTCTCAAGTTTCAATTAGGATCATCGCATGGAAGATTCGTTCTTGCTAATAAAGATTTTTCAAATCATCAGCTCAGAGGGCTTAATGTTATTTTAGCTGATGATGATAATGTAAACAGGACTGTAACGAAGAAGCTACTTGAGAAGCTTGGTTGTCAAGTAACCGCTGTTTCATCGGGTTTTGATTGTTTAGCTGCTATAACTGCCTCCAGTGTGTCATTCAAAATCATTCTATTGGATCTTCACATGCCTGAAATGGACGGTTTTGAAGTTGCAAGGAAGATTCGAAAGTTCCAAAGCCGGAATTGGCCTTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCATCCTACATGAGATAGCTGAAGAAATTAGAACAGTCTTGTTGCGCGCAGATTACGGAGATGCTTGTCACTGTCGAACGGAGAAAGATGAAATACAAAGTTTTGGTAACGCATATAATTTGATTATCTTATGCGTGTGTAACTTTTTCTTTTTTAAATATATGAACTTATTTAAACTCTTTTGA 1908 0.4083 MLKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDEDIRVMHLTHELKPNPGRNFHSSISVNDLDVLEIRKSKSVLVLRLDSELGAASSGGSEDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSNSRVWTSPEMEIVEVVADQVAVALSHASVLEESQIMREKLAEQNRALQQAQKYAMMASQARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRSEQKIVVDTILKVSNSLSRLINDVMEISANDKGSFQLELKHFHLHSMMREASCIAKCLCVYKGFRLEIDVQRSLPDMVIGDEARSFQIILHMIGYLLNLYDRGTLVFQVSLESDTGVDMDDRSSGIWRSSLQNDNVYIKFNFQITGTSSHSDESILTSKMHHGNVPKEGLSFSICKTLVQMMQGNIWISPNSLGLAQGVTVLLKFQLGSSHGRFVLANKDFSNHQLRGLNVILADDDNVNRTVTKKLLEKLGCQVTAVSSGFDCLAAITASSVSFKIILLDLHMPEMDGFEVARKIRKFQSRNWPLIIALTASAEEHIKERCLQVGMNGLIRKPIILHEIAEEIRTVLLRADYGDACHCRTEKDEIQSFGNAYNLIILCVCNFFFFKYMNLFKLF* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0141 635 Gene3D - 455 589 - -
Psa3g0141 635 ProSiteProfiles Response regulatory domain profile. 470 588 IPR001789 GO:0000160
Psa3g0141 635 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 193 273 IPR036097 GO:0000155|GO:0007165
Psa3g0141 635 PANTHER ETHYLENE RECEPTOR 1 588 - -
Psa3g0141 635 SMART REC_2 469 584 IPR001789 GO:0000160
Psa3g0141 635 Coils Coil 178 198 - -
Psa3g0141 635 ProSiteProfiles Histidine kinase domain profile. 215 449 IPR005467 -
Psa3g0141 635 SMART HisKA_10 208 273 IPR003661 GO:0000155|GO:0007165
Psa3g0141 635 Pfam GAF domain 25 172 IPR003018 GO:0005515
Psa3g0141 635 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 588 - -
Psa3g0141 635 CDD HisKA 206 268 IPR003661 GO:0000155|GO:0007165
Psa3g0141 635 Pfam His Kinase A (phospho-acceptor) domain 209 272 IPR003661 GO:0000155|GO:0007165
Psa3g0141 635 Gene3D - 272 450 IPR036890 -
Psa3g0141 635 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 277 441 IPR036890 -
Psa3g0141 635 SMART gaf_1 23 182 IPR003018 GO:0005515
Psa3g0141 635 Pfam Response regulator receiver domain 471 584 IPR001789 GO:0000160
Psa3g0141 635 Gene3D - 173 271 - -
Psa3g0141 635 SUPERFAMILY CheY-like 465 588 IPR011006 -
Psa3g0141 635 Gene3D - 7 172 IPR029016 -
Psa3g0141 635 CDD REC_ETR-like 469 584 - -
Psa3g0141 635 CDD HATPase_ETR2_ERS2-EIN4-like 314 443 - -
Psa3g0141 635 SUPERFAMILY GAF domain-like 26 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0141 Psa-Chr3 17040019 17042787 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0141 1 591 Miscellaneous Gene Families AT3G04580 58.484 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa3g0141 GAF 3e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0141 K14509 - gmx:100805023 942.569