Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0127 ATGGCATTTGTCTCTGGATTTCAGCGGTTACTCGGCCATTCCCAGACCCACTTCACTTCGATTCGTTTCAATTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCAAGATTGACAACGGATGAAAAGCTTACTGAAGCATTTTCTCCTTTTGGGCAGCTCATGGAAGCTAAGGTGATAATTGACAGAGCCTCCGGAAGATCAAAGGGGTTCGCTTTTGTGTCGTATGCAACCGTAGAAGAAGCTGACAAGGCCAGAGAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAACCTCGACCTCCTCCGCAAGCAGAATCTCAGGCATCTCAAACAGGGTTCACAGTTAATAAGACTGTTGGATGGTGTGGTTGA 411 0.4574 MAFVSGFQRLLGHSQTHFTSIRFNSTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLMEAKVIIDRASGRSKGFAFVSYATVEEADKAREGMNAKFLDGWVIFVDPAKPREPRPPPQAESQASQTGFTVNKTVGWCG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0127 136 Gene3D - 20 130 IPR012677 -
Psa3g0127 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 98 IPR000504 GO:0003723
Psa3g0127 136 PANTHER NUCLEOLAR PROTEIN 8 1 136 - -
Psa3g0127 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Psa3g0127 136 SUPERFAMILY RNA-binding domain, RBD 29 126 IPR035979 GO:0003676
Psa3g0127 136 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 136 - -
Psa3g0127 136 SMART rrm1_1 31 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0127 Psa-Chr3 14123827 14126957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0127 32 112 Eukaryotic Initiation Factors Gene Family AT3G16380 38.272 1.94e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0127 - - qsu:111989558 202.601