Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0062 ATGGAAGAAGAAAAGAGCCATAGAATGTACAACCTGTTCGTGAAGCACTTGAACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTCTATGCAACTTCCATCAAGGATCGTCTCTTCCATCTCACCGGAATCCCAATCCAACACCAGCGCCTCGTCACCGGTTGCCGCCACCTTAACGACGATAAATCGGCGATATGGTGTTCGCCGGAAGGAGGAAACATGTTCCCCTCTGTGCGTCTGCTTCTTCGTCTGAAAGGCGGCAAGGGAGGATTTGGATCGCTGTTGCGTGGGGCGGCGACGAAAGCCGGGCAGAAGAAGACAAACAATTTTGACGCGTGTAGGGATATGAGTGGGCGAAGATTGAGACATGTTAATGCTGAGAAGAGATTGGAGGAATGGAGAGAAGGTGAAGAGGATAGAAAGCTTGAGAAGGTTGCTGAGGATTTTCTGAAGAAACAGATGAAGAAGAATAAGGGTAAGGGTAAGAATGGTGTTGAGGGTGAGGCCCAAAAGTATGTTGCCAAATATAGGGAACAATCTGAACGCTGTGTTGCCGATGTTGCTTTGTCTGTTCAGGAGTCTCTCAGAAATTCTAAGCGCAAATCTTCAGCAATATCAGAAGCTCCTCGACCTCGCGATCAGAAGAAATTGAAGATATGGATGGGGAAGAGGCCACTGGATGAAAGTGACAATAGTGATGATTCTGATGAAGATGTTAAGGATGTTGAGGAAGAAACTGAGAAATCTGTTTTGTTAAATAGTCAGAATGAGTCTGGGTTAAACAAAGCTGATGATAGTTCTGATTCTGTGACTGGTCTAAAGAGGGATGGAGGCTCTTCTGGGGTTGGCTCATGTGAGAGTGGATCTGAAGAAGAAAGGGAAACTGTTGTAGAAGAAGGCAGAGTGGAAACTGTTGAAGGATCCCCCCAAAGTAATGAAACTATTGAGGCAAAACTGAGTGTTGATGCCGAGCCCATGATAAACGATGACATGGCCGAGGCTAATGCTGTTCCTTGTTCAGAGATGTTGGATTCTGGAATTAGTGCTCAAGATATTGTCTGTCAGGATAACAAGGTTGATGACACTGTTACTCAAGCCTCAGATCTTGTGAGCTCTGAAATTGTGCCTAATGACATGGAAATTGACGTTTCTCTTGAGCATAAACCAGCTGTCATTGAAGAAAGCTTGCCAAACACTGTTGTTCCAGCAAAGGAAGAGCCTCTGAATTTTGATGCTTTTAATACAGCTGCAGAACTTGAGGCTCTTGGCTTGGAAAAGTTGAAGACAGAACTCCAGTCACGAGGCCTAAAATGTGGAGGTACTTTACAGGAGCGTGCTGCCAGACTTTTTCTTTTAAAATCGACACCTCTGGATAAACTACCGAAGAAACTGCTAGCAAAGAAATAA 1413 0.4487 MEEEKSHRMYNLFVKHLNGKTLTLLFPSPILYATSIKDRLFHLTGIPIQHQRLVTGCRHLNDDKSAIWCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWREGEEDRKLEKVAEDFLKKQMKKNKGKGKNGVEGEAQKYVAKYREQSERCVADVALSVQESLRNSKRKSSAISEAPRPRDQKKLKIWMGKRPLDESDNSDDSDEDVKDVEEETEKSVLLNSQNESGLNKADDSSDSVTGLKRDGGSSGVGSCESGSEEERETVVEEGRVETVEGSPQSNETIEAKLSVDAEPMINDDMAEANAVPCSEMLDSGISAQDIVCQDNKVDDTVTQASDLVSSEIVPNDMEIDVSLEHKPAVIEESLPNTVVPAKEEPLNFDAFNTAAELEALGLEKLKTELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0062 470 MobiDBLite consensus disorder prediction 253 269 - -
Psa3g0062 470 Gene3D - 2 91 - -
Psa3g0062 470 MobiDBLite consensus disorder prediction 205 232 - -
Psa3g0062 470 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 469 - -
Psa3g0062 470 MobiDBLite consensus disorder prediction 196 317 - -
Psa3g0062 470 SUPERFAMILY Ubiquitin-like 6 74 IPR029071 -
Psa3g0062 470 MobiDBLite consensus disorder prediction 289 303 - -
Psa3g0062 470 Pfam Replication stress response SDE2 C-terminal 400 469 - -
Psa3g0062 470 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 164 IPR024974 -
Psa3g0062 470 PANTHER SPLICING FACTOR SF3A-RELATED 9 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0062 Psa-Chr3 8755462 8758772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0062 394 469 C2H2 Transcription Factor Family AT5G06160 48.684 1.15e-13 71.2