Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0061 ATGGATATCTTGAACTTCCTCTTTCACTTGTTCATGTTCTTTCCTGTCATATATACTTTACAAAATTCATGTCAAAGTTCTTGGTGTAGTGAGAATAACATCCTTATTCGTTTCCCTTTTCGATTAGAAGTCGAAGGTGATCAAGGAAATCCTTATTGTGGTTATCCTGGTTTCGAATTGAGTTGTACTAATGATAGCAGAACAATTCTAACACTCCCTTATTCAGGAGTGTTCTATGTTCGTGATATCGATTATCTTCGACAATATATACAAGTCTATGACCCTCACCGTTGTCTTCTGAATCGTCTTCTAAGCCTTAATCTTTCAGGTTCACCTTTCGTTACGGGATTTCTGACTAATTTCACTCTCTTGAGCTGCTCAAGTCCAAACATTGGATCACAGTTCATACCGGTTGACTGTCTTAGCAATTCTACACATTTTGTATCAGTTTTTCCTTCATTGAGCTTCACCAATTCATTGCCTCAGTCTTGCTATGTTATTGGAAATCTCTCAGTTCCTGTTGATAGTTCATATCAGGATTTTTTCTTAAACAATCAAGTCAGTGAAGATTTTGAACTGACATGGTCTAAACCGAATTGTAGATACTGCGAATTACAAGATGGTTTGTGCGGATTCAAGAGCAGAAATAGTGATCAAGTTCGCTGTTTCTCTAATCACCAAACAAACCATCAAACGGGTCATTCAGATGACGACCTTTTGATTTCTAGAATAATCATATTATGTGTTGGGGGAACAGCTTTGTTGTTTGCAATTGGGACAGGATGCTTAGCACGCTACAGTCGCAGAAGGACAATATCAGATGAACCAGCCATTACCATTACAAGGATGGGGGTGGGTCTTGATGAGTCAACAATTGAATCTTTTGGGAAGATTGTATTAGGGGAGAGTCGACGACTGCCGGGTGTGGAACACAATGATGGAACCTGTTGTTGCCCAATATGTCTCTCAGAGTACAACAGCAAGGACATAATCAGATGCATTCCTGAATGTAGACACTGCTTCCATGCTCATTGCATTGATGAATGGCTTCGCATGAACACCACATGCCCGATTTGCCGTAACTCAGCCTCTCCTCATTTTCAATGA 1107 0.3984 MDILNFLFHLFMFFPVIYTLQNSCQSSWCSENNILIRFPFRLEVEGDQGNPYCGYPGFELSCTNDSRTILTLPYSGVFYVRDIDYLRQYIQVYDPHRCLLNRLLSLNLSGSPFVTGFLTNFTLLSCSSPNIGSQFIPVDCLSNSTHFVSVFPSLSFTNSLPQSCYVIGNLSVPVDSSYQDFFLNNQVSEDFELTWSKPNCRYCELQDGLCGFKSRNSDQVRCFSNHQTNHQTGHSDDDLLISRIIILCVGGTALLFAIGTGCLARYSRRRTISDEPAITITRMGVGLDESTIESFGKIVLGESRRLPGVEHNDGTCCCPICLSEYNSKDIIRCIPECRHCFHAHCIDEWLRMNTTCPICRNSASPHFQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0061 368 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 366 - -
Psa3g0061 368 CDD RING-H2_EL5_like 318 360 - -
Psa3g0061 368 SUPERFAMILY RING/U-box 317 364 - -
Psa3g0061 368 Pfam Ring finger domain 318 360 IPR001841 -
Psa3g0061 368 Pfam Wall-associated receptor kinase galacturonan-binding 24 94 IPR025287 GO:0030247
Psa3g0061 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 365 IPR013083 -
Psa3g0061 368 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 366 - -
Psa3g0061 368 Pfam Wall-associated receptor kinase C-terminal 160 225 IPR032872 -
Psa3g0061 368 ProSiteProfiles Zinc finger RING-type profile. 318 360 IPR001841 -
Psa3g0061 368 SMART ring_2 318 359 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0061 Psa-Chr3 8753590 8754902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0061 21 365 C3H Transcription Factor Family AT2G25410 40.970 5.47e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0061 - - gmx:100798415 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0061 3 8753590 8754902 Psa4g3727 4 313112762 313114452 PCT