Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0054 ATGGATGCTGAAACTCGATGTAAAGTTGAAGAAATGGTGATGGATATACTCACAAACTGCAGCATTGAAGGAGCCACTGAGCTCTCCGTCCGACTTGCCGCTTCCGAGCGACTCGGTATCGACCTTTCTGACTTACACAGCAGACGATTTGTCAGAAACATCGTCGACTCTTACCTTATCTCCATCGCCACCGACGTCGACAAACGGAAGGAACCGCCGCAAGCTTCCGCCGAGGCAGTGGATGTGATACACAGAGAACCGCCACAAGAGTCCAATAAGGTGGTGGAAGTGAAGCGCAAAAAAGACGGCTCTGAACACGTTATTTGTCAGCTATCAACCAGAAGGAAGGTGACTGTCCAAGATTTCAAAGGGACGACATTGGTGTCAATTAGGGAGTTTTATCTAAAAGATGGAAAACAGCAGCCCACTACTAAAGGGATAAGTTTACCTCCTGACCAATGGTCAACCTTCAAGAATAGTGTTCCTGCCATAGAGGAAGCTATCACAAAGTTGGTAGGAAGGATAAGATCAGGGCATAATAGCTGGAAAAATAGAGAAGTTTCAAGTTCAGTTGCTGATGTTCCTGTTGAGCCTGTCCCTATTGAGCCTGTCTCTATTAAACCTGTTTCTGTTGAGCCTGTGCCCATTGAGATTGTCCCTATTGAGATCGTTCGTTTTGATGGGAAGAATTACCAAGTTTGGGCTGAACAGATAGAATTACTCTTGAAACAGTTGAAGATTAATTATGTGCTTACGGAACCATGCCCAAATGCTACATTAGGGAAAAACGATGCTAGTGCTGGAGAAATTTCTAAAGCCAAAGCTGCTGAAAAGAGATGGGTAAATGATGATTTAATGTGTCGTCGCAACATCTTGGGCCATTTGTCTGATAGTCTATTCAACAAGCATGCTAATAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTGAGATATGTTTATCTGTTCGAGGAATATGTAACCAAGAGATCTCAGGTGAAAAAGTATATTGAATTTCAAATGGTTGATGAGAAAGCAGTTGCTGAACAAATTCAAGAACTTGATCGCATTGCAGACTCTATTGCTGTTGCTGGAATGCATATAGACGAGAATTTTCATGTCAGTGTCATCATTTCAAAGCTTCCACTATCATGGAAAGACTTCTGCATCAAGTTAATGCGCGAGGAGCATCTATCTTTGTTGATGTTAATGGAGCGCATAAGAATAGAAGAAGAATCCCGCACTGGAGTCAAACAAGTTGGTGAATCTCCTTCTGATAATGTAAGATTTCACGATGCCAATAAAGGAGGAATAAAGGGGGCTGACATTAAGCCGCCGCCAGCACCATTCGGAGAATGGAATTTTGACACATCAAAATACAACAATTTAAGAATACATCATTGA 1404 0.4224 MDAETRCKVEEMVMDILTNCSIEGATELSVRLAASERLGIDLSDLHSRRFVRNIVDSYLISIATDVDKRKEPPQASAEAVDVIHREPPQESNKVVEVKRKKDGSEHVICQLSTRRKVTVQDFKGTTLVSIREFYLKDGKQQPTTKGISLPPDQWSTFKNSVPAIEEAITKLVGRIRSGHNSWKNREVSSSVADVPVEPVPIEPVSIKPVSVEPVPIEIVPIEIVRFDGKNYQVWAEQIELLLKQLKINYVLTEPCPNATLGKNDASAGEISKAKAAEKRWVNDDLMCRRNILGHLSDSLFNKHANRKMSAKELWEELRYVYLFEEYVTKRSQVKKYIEFQMVDEKAVAEQIQELDRIADSIAVAGMHIDENFHVSVIISKLPLSWKDFCIKLMREEHLSLLMLMERIRIEEESRTGVKQVGESPSDNVRFHDANKGGIKGADIKPPPAPFGEWNFDTSKYNNLRIHH* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0054 467 SUPERFAMILY ssDNA-binding transcriptional regulator domain 108 170 IPR009044 GO:0003677|GO:0006355
Psa3g0054 467 Pfam gag-polypeptide of LTR copia-type 280 414 - -
Psa3g0054 467 PANTHER PBF68 PROTEIN 1 446 - -
Psa3g0054 467 Gene3D Transcriptional Coactivator Pc4; Chain A 98 174 IPR009044 GO:0003677|GO:0006355
Psa3g0054 467 Pfam Transcriptional Coactivator p15 (PC4) 109 159 IPR003173 GO:0003677|GO:0006355
Psa3g0054 467 PANTHER PBF68 PROTEIN 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0054 Psa-Chr3 8245317 8248294 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Psa3g0054 Retrotran_gag_2 4.8e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0054 - - cam:101512708 532.717