Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0053 ATGGAGGATGAAACTCGACGAAAAGTTGAAGACATGGTGTTGGATATTCTCAAAAAATCCAACATTGAAGAAACCACTGAGTTCACCGTCCGAGTTGCCGCTTCCGAACGACTCGGTATCGACCTTTCCGACTCACTCAGCAAACAATTTGTCAGAACCATTATCGAGTCTTACCTTATCTCCATCGCCACCGACGACAAACCGGAGGAACCGCCGCAAGTTTCCACCGAGGCAGTGAATGTGATACACAATGAACCGCCACAACAGTGCAATAATGTGGTGGGAGTGAAACGCAAAAACGACGATTCCGAACACGTTATTTGTCAGCTATCAACCAAGAGGAATGTGACTGTCCGAGATTTCAAAGGGACGCCAATGGTGTCAATTAGGGAGTTTTATCTAAAAGATGGAAAACAGAAGCCCACTACTAAAGGGATAAGTTTACCTTCTGAACAATGGTCAAACTTCAAGAATAGTGTTCCTGCCATCGAGGAAGCTATCACAAAGTTGGAAGGAAGGATAAGATCAGGGCATAATGGCTGGAAAAATGGAGAAGTTTCAAGTTCAGTTGCTGATGTTCCTGTTGAGCCTGTCCCTATTGAGCCAGTCTCTATTAAGCCTGTGCCCATTGAGCTTGTCCCTATTGAGATCGTCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCTGAACAGATAGAATTACTCTTGAAACAGTTAAAGATTAATTATGTGCTTACCGAGCGATGCCCAAATGCTATGTTAGGGGAAAACAATGCTAGTGCTGGAGAAATTTCTATAACCAAAGCTGCTGAAAAGAGATGGGCAAATGATGATTTAATGTGTCGTCGCAACATCTTGAGCCATTTATCTGATACTCTATTCAACAAGTATGCAAATAGAATAATGAGTGCTAAGGAGTTATGGGAAGAGTTGAAATATGTTTATTTGTTTGAGGAATATGGAACCAAGAGATCTAAGGTGAAAAAGTATATTGAATTTCAAATGGTTGATGAAAAAGAAGTCGCTGATCAAATTGAAGAACTTAATCGCATTGCAGACTCTATTGCTGCTGCTGGAATGCGTATAGAGGAGAACTTTCATGTCAGTGTCATCATTTCAAAGCTTCCACGGTCATGGAAAGACTTCTGCATCAAGTTAATGTGCGAGGAGCATCTACCTTTCTGGATGTTAATGGAGCGCATAACAATAGAGGAAGAGTCTCGCAATGGAGTCAAACAAGTTGGTGAACCTCCTTCTGATAATGTAAGATTGCACCATGACAATAAAGGAGGAATCAAGGGGTCTGACATTAAGCCGCAACCAGGTTTTCCAAGGAAGTTTGAACCTAATGGCAAGAACAAAACCTGTTATATTTGTGGTCAAAAGGGGCATATTTCTAAAAACTGTTGGAGATGGCTGTAA 1422 0.4156 MEDETRRKVEDMVLDILKKSNIEETTEFTVRVAASERLGIDLSDSLSKQFVRTIIESYLISIATDDKPEEPPQVSTEAVNVIHNEPPQQCNNVVGVKRKNDDSEHVICQLSTKRNVTVRDFKGTPMVSIREFYLKDGKQKPTTKGISLPSEQWSNFKNSVPAIEEAITKLEGRIRSGHNGWKNGEVSSSVADVPVEPVPIEPVSIKPVPIELVPIEIVRFDGKNYQVWAEQIELLLKQLKINYVLTERCPNAMLGENNASAGEISITKAAEKRWANDDLMCRRNILSHLSDTLFNKYANRIMSAKELWEELKYVYLFEEYGTKRSKVKKYIEFQMVDEKEVADQIEELNRIADSIAAAGMRIEENFHVSVIISKLPRSWKDFCIKLMCEEHLPFWMLMERITIEEESRNGVKQVGEPPSDNVRLHHDNKGGIKGSDIKPQPGFPRKFEPNGKNKTCYICGQKGHISKNCWRWL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0053 473 PANTHER PBF68 PROTEIN 1 468 - -
Psa3g0053 473 PANTHER PBF68 PROTEIN 1 468 - -
Psa3g0053 473 Pfam gag-polypeptide of LTR copia-type 274 409 - -
Psa3g0053 473 SUPERFAMILY Retrovirus zinc finger-like domains 443 469 IPR036875 GO:0003676|GO:0008270
Psa3g0053 473 Pfam Transcriptional Coactivator p15 (PC4) 108 158 IPR003173 GO:0003677|GO:0006355
Psa3g0053 473 Pfam Zinc knuckle 454 469 IPR001878 GO:0003676|GO:0008270
Psa3g0053 473 Pfam DEK C terminal domain 5 59 IPR014876 -
Psa3g0053 473 Gene3D Transcriptional Coactivator Pc4; Chain A 97 175 IPR009044 GO:0003677|GO:0006355
Psa3g0053 473 ProSiteProfiles Zinc finger CCHC-type profile. 456 469 IPR001878 GO:0003676|GO:0008270
Psa3g0053 473 Gene3D - 436 471 - -
Psa3g0053 473 SUPERFAMILY ssDNA-binding transcriptional regulator domain 107 169 IPR009044 GO:0003677|GO:0006355
Psa3g0053 473 SMART c2hcfinal6 455 471 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0053 Psa-Chr3 8238068 8241331 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Psa3g0053 Retrotran_gag_2 2e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0053 - - cam:101512708 578.556