Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0051 ATGGACTCCTTTTACGGTGGCCGCCCTAATGCGGCGGAAAACCGAGGCGGTGTCGCCGGAGAGAAACAGGTGCCGAGGCTTAACAATCAAATCCAGAACGGAATTCAAGAGGCGGAAAAACTCAGATTCTACAGCAGGAGGAGGAAGATCGCCGATCTCAATAACGGATCGGACTCGGCGCTCAATGGAAACTCCACCAGAAAGAAGAAGAAACCGATCGATCAAGAGAATGAAGGTGATTCTGGGAAAGGATTAATTGATGTGTATAAGGTCAATAAACCCATAAATGGAGTTAAAGATACCAAACAACGGTGTTTATCTACCAAAACCAAGGAGGGTGGAAGTTTGATGTGCCATCAGTGCCAACGGAATGATAAGACTGGTGTTGTCTTTTGCTCAAGTTGCAACAAAAAGCGCTATTGTTATGAATGCATTAAGAACTGGTATCCAGGAAAAACCCATAAGGAATTTGAGAATGCATGTCCATTTTGTTGGGGCAATTGCAACTGCAAAGCTTGCTTGCGGGAGTTTCCTCCGCGAATGGACCGAGAAGTAGATGCCAGGGTCAAATTACAGCGACTGCTGTACTTACTATCTAAAGCCCTGCCAGTTCTGAGGCATGTCCACAAGGAGCAGAGCTTGGAACTAGAGACTGAAACCAAAATAAGGGGTAAGCAAGTGCAAGAAATTGACATAACAAGATCAAAGCTAAATGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCCATACATGGATTTTACCGTAGCTGCCCCAACACCAGTTGCTCTTATGATCTCTGTCTCGTGTGCTGTCAAGAGCTCAGAGAGGGATGCCAACCTGGAGGCATGGAGGCTGGAACATCTCATGAAAATTTTGGAAAGATTTTTCACAATCATTGTTCAACAAAAAATCAGAGTAAAACACATCGTAGAAGATATGACTGGGAAAGTGAACTTGCACCTACTAGTTTACCTTCCCAGTCTGACATGCTCTCTCCCTTCCCAGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAACAGCGTGGAGGTTGTAGTTCTGCATTGCTTGAACTGAGACGCATTTACAAAGCTAATTGGGTGGCAAAGCTGCTAAATAATGCTGAGGATCTCACTAGAAATTATGCGCCTCTGGATGTAGATATTACTGAAAAGTGTTCTGTATGCCAGCTAAATTTGGTAGAAGGAAAAATCAATCCTGAAGTCAGGAGAGCAGCATTTCGGGATGACAATAAAGATAACTTCTTATATAGTCCAAATGCCCTTGGTATTTCTGATGATGAGATCGAGCACTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATGTTCTGGACAAAACATCTGGTCTTAGTTGGGAACCAATGGTAATGTGGAGGGCCCTCCGAGAAACAGGTTCCAAAGTGAAGTTCAAGGAGGAAACACAAAGTGTCAAGGCTGTCGATTGCTTGGATTGGTGCGGGGTTGAAATAAATATACACCAGTTTTTCCAAGGCTACCTAAAGGGTCGAATGCATAAAAATAAGTGGCCAGAAATGTTGAAATTAAAAGATTGGCCTTCATCGACCTCTTTTGAAGAGCGCTTGCCGAGGCATGGTGCTGAATTCCTTGCTGCACTCCCCTATATGGACTACACTGATCCAAAATCGGGTCTTTTAAATTTTGCCAGTAAACTTCCTAATGACTCGTTGAAACCAGATTTGGGACCCAAAACATACATTGCTTATGGGTTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTTACAAAACTGCACTGCGATGTGTCTGATGCGGTGAATGTGCTGACACACACAAACAAGGTGAATATAGAGGACTGGCAGAGAGAAAGCATAAACAAATTGAAGAAGACATATGATAAAGAAGACGACTTAGAACTTTATAGTGAAGCTGAGGCTGGTGATCCCAAGATAGAGTCAAAACAAGGCCATGGGAGAGATTCCTTGGACATTGATAAAGGAGCTGAGGAGGCTGTCCTTGGTGGCGCTGTTTGGGACATATTCCGCCGGGAAGATGTCCCAAAGTTAATCGAGTACGTAAGAAAGCACCAGAAGGAATTTCGTCATATCAACAATGAACTCGTTGATTCGGTTATACATCCCATTCACGATCAGACTATATTCTTAAATGCGAGGCATAAGAAACAGCTCAAAAGAGAATTTAATGTTGAACCATGGACTTTTGAGCAACATCTTGGAGAAGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAGTCATGTATGAAGGTTGCACTTGACTTTGTTTCACCGGAAAACGTTGGAGAATGTTTACGACTAACAGAAGAGTTTCGTTTACTCCCAAAATACCACAGAGCGAAGGAGGACAAATTGGAGGCAAGTGTGTTTAGTTTCTGA 2454 0.434 MDSFYGGRPNAAENRGGVAGEKQVPRLNNQIQNGIQEAEKLRFYSRRRKIADLNNGSDSALNGNSTRKKKKPIDQENEGDSGKGLIDVYKVNKPINGVKDTKQRCLSTKTKEGGSLMCHQCQRNDKTGVVFCSSCNKKRYCYECIKNWYPGKTHKEFENACPFCWGNCNCKACLREFPPRMDREVDARVKLQRLLYLLSKALPVLRHVHKEQSLELETETKIRGKQVQEIDITRSKLNESERLYCDNCSTSIHGFYRSCPNTSCSYDLCLVCCQELREGCQPGGMEAGTSHENFGKIFHNHCSTKNQSKTHRRRYDWESELAPTSLPSQSDMLSPFPEWKANSDGNIPCPPKQRGGCSSALLELRRIYKANWVAKLLNNAEDLTRNYAPLDVDITEKCSVCQLNLVEGKINPEVRRAAFRDDNKDNFLYSPNALGISDDEIEHFQRHWMRGEPVVVRNVLDKTSGLSWEPMVMWRALRETGSKVKFKEETQSVKAVDCLDWCGVEINIHQFFQGYLKGRMHKNKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPNDSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIEDWQRESINKLKKTYDKEDDLELYSEAEAGDPKIESKQGHGRDSLDIDKGAEEAVLGGAVWDIFRREDVPKLIEYVRKHQKEFRHINNELVDSVIHPIHDQTIFLNARHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVGECLRLTEEFRLLPKYHRAKEDKLEASVFSF* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0051 817 Gene3D Cupin 432 806 - -
Psa3g0051 817 MobiDBLite consensus disorder prediction 64 79 - -
Psa3g0051 817 ProSiteProfiles JmjC domain profile. 563 797 IPR003347 -
Psa3g0051 817 SUPERFAMILY Clavaminate synthase-like 441 812 - -
Psa3g0051 817 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 672 812 IPR045109 GO:0032454|GO:0033169
Psa3g0051 817 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 663 IPR045109 GO:0032454|GO:0033169
Psa3g0051 817 ProSiteProfiles Zinc finger RING-type profile. 118 164 IPR001841 -
Psa3g0051 817 SMART cupin_9 544 797 IPR003347 -
Psa3g0051 817 CDD cupin_RmlC-like 721 769 - -
Psa3g0051 817 Pfam JmjC domain, hydroxylase 680 780 IPR003347 -
Psa3g0051 817 MobiDBLite consensus disorder prediction 54 79 - -
Psa3g0051 817 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 672 812 - -
Psa3g0051 817 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 10 663 - -
Psa3g0051 817 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0051 Psa-Chr3 8079970 8090346 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa3g0051 JmjC 6.6e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0051 K15601 - mnt:21406261 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0051 3 8079970 8090346 Psa3g0051 3 8079970 8090346 ECH