Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0045 ATGGACGAAAATAAACCAACACCGTCCATTGAAAATGACGTAACCACCGCTGACAGCCGGAGAGTTGGAACCCGCCACCCTGTCTACCGCGGTGTCCGGAAACGGCGATGGGGAAGATGGGTATCCGAGATTCGGGAACCCAAGAAGAAATCTCGTATATGGCTTGGATCATTCCCGGTACCGGAGATGGCCGCAAAAGCGTACGACGTCGCAGTATATTGCCTCAAAGGCCGAAAAGCGCAACTCAATTTTCCCAACGAGGTGGAAAACCTACCACTTCCGGCCACTTCTACGGCAAGAGACATTCAAGCGGCGGCGGCCAAGGCGGCGAGTATGATGAAATCTTCACTTGACGAGAAGAGTTGCATTGTGTCAGATGGAGATAGCGGCGGAGATGATTTTTGGGGTGAGATTGAGTTACCGGAGCTGATGGAAAATGAGTGTTGCTGGAATTCTCCGAGTGACATGACGGTGTGGACGGAGGTTGAGGTTTTGGCGCAGCAACCTTTGATGTCGTGTTCTTTTAATAACTAA 534 0.5112 MDENKPTPSIENDVTTADSRRVGTRHPVYRGVRKRRWGRWVSEIREPKKKSRIWLGSFPVPEMAAKAYDVAVYCLKGRKAQLNFPNEVENLPLPATSTARDIQAAAAKAASMMKSSLDEKSCIVSDGDSGGDDFWGEIELPELMENECCWNSPSDMTVWTEVEVLAQQPLMSCSFNN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0045 177 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Psa3g0045 177 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Psa3g0045 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 160 - -
Psa3g0045 177 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Psa3g0045 177 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Psa3g0045 177 MobiDBLite consensus disorder prediction 1 26 - -
Psa3g0045 177 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Psa3g0045 177 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Psa3g0045 177 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Psa3g0045 177 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Psa3g0045 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 4 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0045 Psa-Chr3 7823640 7824521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0045 24 173 AP2-EREBP Transcription Factor Family AT1G01250 59.873 4.49e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g0045 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0045 K09286 - gmx:100802036 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0045 3 7823640 7824521 Psa3g0045 3 7823640 7824521 ECH
Psa3g0045 3 7823640 7824521 Psa4g3757 4 315793507 315795130 PCT