Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0041 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGGTTGCATCGAGGTCCGTGGACTTCTCGCGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAGATCACTTCCAAAAAGAGCTGGGCTTTTGAGATGCGGAAAAAGTTGCAGACTTCGATGGATGAACTATCTGAGACCGGATATAAAGAGAGGAAACATAACTCCTGATGAAGATGATCTTATTATAAGAATGCATTCGCTTCTGGGTAATAGATGGTCTCTTATTGCCGGAAGATTACCAGGAAGAACAGATAATGAGATAAAGAATTACTGGAACACGCATCTCATTAAAAAACTCAAAAATCAAGAACAACAACCAGAGGAGAAGAAGAAGAAAAAGAAGCAGAAGAACGAAAAGAACAAAATCATAACAAAAGTACCAGAAGATGATTCGGAGAGGAAGACATTAGTTTATCTACCAAAGGCGATAAGGGTCAACAAGAGTTTATCATATATAATACCAAGAAGTGATAGTACCTTAAACATGGAATCCAACTCAGTAAAAACAAGCCAAGAGGAAAAAGAGCAAAGAGAAGAAACAAAAGAGGGAGAGAATGATGGGTTTGGATTGTTCTTTGGTGAACAGTTCCATGAAGATTTGGTCAACAACAATGAGATGGAATGGCAATCTGGTTTTCTTGAGAAATTGTATGAAGAGTACTTGCAGGTATTGAAGAATGAAGAGAATCATGAAAAACTGTTAGATTCTTTTGCCGAGTCTTTATTGGTGTGA 783 0.3819 MGRAPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLIKKLKNQEQQPEEKKKKKKQKNEKNKIITKVPEDDSERKTLVYLPKAIRVNKSLSYIIPRSDSTLNMESNSVKTSQEEKEQREETKEGENDGFGLFFGEQFHEDLVNNNEMEWQSGFLEKLYEEYLQVLKNEENHEKLLDSFAESLLV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0041 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa3g0041 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa3g0041 260 MobiDBLite consensus disorder prediction 115 140 - -
Psa3g0041 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa3g0041 260 CDD SANT 16 61 IPR001005 -
Psa3g0041 260 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa3g0041 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa3g0041 260 Gene3D - 14 66 - -
Psa3g0041 260 Gene3D - 71 142 - -
Psa3g0041 260 MobiDBLite consensus disorder prediction 179 200 - -
Psa3g0041 260 PANTHER MYB TRANSCRIPTION FACTOR 124 248 - -
Psa3g0041 260 PANTHER MYB TRANSCRIPTION FACTOR 1 120 - -
Psa3g0041 260 MobiDBLite consensus disorder prediction 185 200 - -
Psa3g0041 260 SMART sant 66 114 IPR001005 -
Psa3g0041 260 SMART sant 13 63 IPR001005 -
Psa3g0041 260 CDD SANT 71 112 IPR001005 -
Psa3g0041 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa3g0041 260 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa3g0041 260 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 124 248 - -
Psa3g0041 260 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 120 - -
Psa3g0041 260 Coils Coil 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0041 Psa-Chr3 7743035 7743940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0041 1 204 MYB Transcription Factor Family AT4G09460 49.756 4.26e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g0041 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0041 K09422 - gmx:778044 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0041 3 7743035 7743940 Psa3g0041 3 7743035 7743940 ECH
Psa3g0041 3 7743035 7743940 Psa4g4947 4 428555274 428556287 PCT