Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0035 ATGGTGCTCGATTCGTTGATTTCTGGTCCTGCTTTGGAAGCTATTTCTCAAAGTATAGATTCGGTTGCTGAGTTTGTGTATTCTGTTGACAATGTTCTTGTGAAGAAGGATAGTTTTAAGCAACTTGCAGATTACTTGCAGAGAGTTGAACCTATTTTGAAGCAGTTGAGGAAGGGAAAGGTTAGTGATTCTGAGACATTCAACCGTGCCATTGAGATTCTGAATCGCGAAATCAAAGACGCGAAGAAACTTGTTCAAGAATGTAGCAAGAAGAGCAAGGTGTATCTTCTGGTGAACTGTAGAACTGTTGGGAAGCGCTTGAAACATAATACGGGTGAGATCAGCAGGGCACTTGGGCTTCTTCCTTTGGCTACGTCGGGTCTTTCGGCTGGAGTAGTTGAAGAAATTGAAAAGTTATGTGATAATATGCAGGAAGCTGAGTTTAAGGCAGCTGTATCGGAAGAGGAGATCTTAGAGAAAATTGAGGCGGGGATACAGGAAAAGAATTTCGACCGTTCCTATGCAAATAATTTGCTGCATCTCATTGCAGATGCTGTTGGGATTACAAAAGAACGGTCGGAATTAAAAAAAGAGCTTGAAGAGTTTAAAAACGAAATTGAAAACGAGAAAGATCGGGCCGAAGCCATACAAATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATGCAGCTTCATCAACTAGGGAAAAGGAACTCAAGTACTTTGCGAAACGTAATTCTTTGGGTACTCAACCGTTGGAGCCTTTACATTCCTTTTATTGCCAGATTACAGGCGATGTTATGGTTGATCCTGTGGAAATTTCATCAGGGCAAACATTTGAGAGAAGTGCAATTGAGAAGTGGTTTGCGGAAGGACACAAAAAGTGTCCTCTGACTTCCATTACTTTAGACACATTGGTTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTTCGCTGAAAGAGAAAATCCAGTCCAGAGATGAAGTTGGAGTATTAAGTTGTTTGCAAACTCTTCAAGATTTGTGCGAACAGAAAGACCAGCACAGAGAATGGGTGGTGCTGGAGAATTATATACCTGTTCTTATCCAAATTCTTTCCGAAAAACACCGAGATAAAAGGAACCGTGTCCTTCGCATCCTTTGCATGCTGGTGAAGGATAATGAAGATGCCAAGGAAAGAATTGCAAATGTTGATAATGCAATCGAGTCTATTGTCCATTCTCTTGGGCGTCGTTTGGGGGAAGGGAAATTGGCAGTGGAATTACTATTGGAACTATCCAAATATGATTTTTTAAGAGAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGACAATCAAGCTGCCAGAGATGCAACAGAGTTACTGGAGAAGCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAGGCAAATTATTTCAAGCATTTATTACAGCGTCTCTCCACAGGAACAGATGATGTGAAGATGGTTATGGTCAAAACGTTGGCAGAAATGGAGTCAACAGACCATAATAAGGAGGTCTTGTTTGACAATGGTATTCTGGCTCCTCTTCTTCACTTAGTCTCACATACTGATGTTCAGATGAAATTAGTTGCTCTTAAAGCTCTTCAGAATCTATCTAGTTTAAAGAAAAATGGACTCGAAATGATTCGACAAGGTGCAGCGCGCCTATTATTTGGCATTCTTTTCCAGCACAGCCTTCCTTCCTCAAGTTTGTGTGAACATGTAGCTCCTATAATTATGCAACTTGCTGAATCTACAATCTCTCAGGATACACAGACACCGGTTTCATTGTTAGAATCCGATGAAGAAGTTTTTAACCTTTTCTCTCTAGTTAGCCACATTCAGCCTGATGTGCGACAATATATTATCCAGACATTTTATGCATTGTGTCAGTCTCCCTCAGCTTCATATATCAGGAACAAGCTAAGAGAGTGTCCATCAGTTCTAGTATTGGTCAAGTTGTTTGAGAATGAAAGTCTAACTCTTCGAGCAAGTGCTGTGAAGCTGTTTTCTTGCCTGGTAGAAAGCTCTGATGAAGCCACCATACTGGAGCATGTGAATCAGAAATGCATTGATACTTTACTCCAGATCCTGAAATCTCCATCTGATGAAGAGGAAATTGTGTCTGCTATGGGAATAATATCTTATCTTCCAAAAACTCAACAAATCACTCAGTGGCTTTTGGATGCCGGGGCGCTGCCAATCATTTGTAACTATATCCAACAAGGGAAGGACAAAGATCTCCTAAAGAGTAAGCTGGTAGAGAATTCTGTTGGTGCCTTATGTCGTTTTACAGTTCCAACAAACTTGGGATGGCAAAAGAGTGCGGCCGAAATTGGGATTATAACTGTTTTAACACAGTTGCTTGAAAGTGGAACTGCTCCAACAAAACAGCTAGCAGCACTGTCCCTAACTCAATTTTCTAAAAGCTCAAACGAACTAAGCATTCCAGTACCGAAGCGCAGGGGATTTTGGTGCTTCTCAGCTCAAGCAGAAGCGGGATGCTTAGTTCATGGTGGTATATGCACTGTGGAGTCATCATTTTGCCTTTTGGAGGCTGATGCAGTGGGACCATTAGCAAAGACTCTTGGAGAATCTGATCCCGGAGTGTGCGAGACTTCTTTAGACGCTCTTCTAACTTTAATCGAAGGAGAAAAGCTACAGAATGGTAGTAAAGTCCTTGCAGATGAAAATGTCATACCGTTAATAATAAGATTTCTCGGTTCTCCTTCCCCCGGATTGCAAGAAAAGTCTCTGAATGCCTTGGAAAGAATTTTCCGGCTATTCGAGTTCAAACAGAAATATGGAGCTTCAGCCCAAATGCCTCTGGTTGACTTAACTCAGCGGGGTAATGGTAGCGTTAAATCCTTGGCAGCTCGAATATTGGCACATTTGAATGTGCTTCATGATCAATCTTCATATTTCTAA 3003 0.4089 MVLDSLISGPALEAISQSIDSVAEFVYSVDNVLVKKDSFKQLADYLQRVEPILKQLRKGKVSDSETFNRAIEILNREIKDAKKLVQECSKKSKVYLLVNCRTVGKRLKHNTGEISRALGLLPLATSGLSAGVVEEIEKLCDNMQEAEFKAAVSEEEILEKIEAGIQEKNFDRSYANNLLHLIADAVGITKERSELKKELEEFKNEIENEKDRAEAIQMDQIIALLERSDAASSTREKELKYFAKRNSLGTQPLEPLHSFYCQITGDVMVDPVEISSGQTFERSAIEKWFAEGHKKCPLTSITLDTLVLRPNKTLKQSIEEWKDRNTMITIASLKEKIQSRDEVGVLSCLQTLQDLCEQKDQHREWVVLENYIPVLIQILSEKHRDKRNRVLRILCMLVKDNEDAKERIANVDNAIESIVHSLGRRLGEGKLAVELLLELSKYDFLREYIGKVQGCILLLVTMSSSEDNQAARDATELLEKLSYSDQNVIQMAKANYFKHLLQRLSTGTDDVKMVMVKTLAEMESTDHNKEVLFDNGILAPLLHLVSHTDVQMKLVALKALQNLSSLKKNGLEMIRQGAARLLFGILFQHSLPSSSLCEHVAPIIMQLAESTISQDTQTPVSLLESDEEVFNLFSLVSHIQPDVRQYIIQTFYALCQSPSASYIRNKLRECPSVLVLVKLFENESLTLRASAVKLFSCLVESSDEATILEHVNQKCIDTLLQILKSPSDEEEIVSAMGIISYLPKTQQITQWLLDAGALPIICNYIQQGKDKDLLKSKLVENSVGALCRFTVPTNLGWQKSAAEIGIITVLTQLLESGTAPTKQLAALSLTQFSKSSNELSIPVPKRRGFWCFSAQAEAGCLVHGGICTVESSFCLLEADAVGPLAKTLGESDPGVCETSLDALLTLIEGEKLQNGSKVLADENVIPLIIRFLGSPSPGLQEKSLNALERIFRLFEFKQKYGASAQMPLVDLTQRGNGSVKSLAARILAHLNVLHDQSSYF* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0035 1000 Gene3D - 430 623 IPR011989 -
Psa3g0035 1000 CDD RING-Ubox_PUB 259 299 IPR045210 -
Psa3g0035 1000 Gene3D - 624 842 IPR011989 -
Psa3g0035 1000 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1000 - -
Psa3g0035 1000 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Psa3g0035 1000 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Psa3g0035 1000 Coils Coil 64 91 - -
Psa3g0035 1000 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Psa3g0035 1000 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 5 98 IPR008808 -
Psa3g0035 1000 Coils Coil 185 219 - -
Psa3g0035 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 328 IPR013083 -
Psa3g0035 1000 Gene3D - 9 126 IPR036537 GO:0007166
Psa3g0035 1000 SUPERFAMILY ARM repeat 329 990 IPR016024 -
Psa3g0035 1000 Coils Coil 136 156 - -
Psa3g0035 1000 SUPERFAMILY RING/U-box 246 327 - -
Psa3g0035 1000 SMART arm_5 525 565 IPR000225 GO:0005515
Psa3g0035 1000 SMART arm_5 912 952 IPR000225 GO:0005515
Psa3g0035 1000 SMART arm_5 702 741 IPR000225 GO:0005515
Psa3g0035 1000 SMART arm_5 745 791 IPR000225 GO:0005515
Psa3g0035 1000 SMART arm_5 868 908 IPR000225 GO:0005515
Psa3g0035 1000 Pfam Armadillo/beta-catenin-like repeat 525 565 IPR000225 GO:0005515
Psa3g0035 1000 Gene3D - 329 429 IPR011989 -
Psa3g0035 1000 Gene3D - 855 998 IPR011989 -
Psa3g0035 1000 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0035 Psa-Chr3 7471065 7474822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0035 258 1000 U-box Gene Family AT1G76390 27.411 6.24e-57 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0035 - - gmx:100799969 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0035 3 7471065 7474822 Psa3g0035 3 7471065 7474822 ECH
Psa4g3784 4 316951627 316957101 Psa3g0035 3 7471065 7474822 ECH