Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0025 ATGGGAAGCGGTGAGAAAAGCGTGAAAGGGTTTCTTCTGCATGGGAAGAAGCAAGGTGTGCCGAAAGGGTTTCTTGCGATCAAAGTGGGTCAAGGTGAAGAAGATCAACAGAGATTCGTTGTGCCTGTGATTTACTTCAATCATCCACTTTTCATGCAGCTTCTGAAAGAAGCTGAGGAAGAATATGGATTTGATCAGAAAGGGACGATAACAATTCCTTGTCATGTTGAAGAGTTCAGAAACATTAGAGGTTTGATTGATAGAGAAAAGTCTCTTCATCATGGTGGATGCTTTGGCTTTTGA 303 0.4191 MGSGEKSVKGFLLHGKKQGVPKGFLAIKVGQGEEDQQRFVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNIRGLIDREKSLHHGGCFGF* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0025 100 PANTHER SMALL AUXIN-UP RNA-RELATED 13 94 - -
Psa3g0025 100 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 13 94 IPR003676 GO:0009733
Psa3g0025 100 Pfam Auxin responsive protein 16 82 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0025 Psa-Chr3 6373132 6374306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0025 20 88 Calmodulin-binding Proteins AT3G43120 47.826 3.07e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0025 - K14488 pvy:116108881 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0025 3 6373132 6374306 Psa3g0025 3 6373132 6374306 ECH