Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0019 ATGTCGGAAGGTGCGGAAATTGATGAGCGTGTTGACCTTGATGAGGAAAATTATATGGAAGAAATGGATGACGATGTTGAGGAACAGCTAGACGAAGATGGAGTGGATGGAGGTGAAGATGAAATTGCTGAAGGTAGTGGTGAAGAAAATGAGTACGAGGAGTCAGCAGCAGAGGTTGGCGGAAAAGAACAATTTCCTGAAGGAGAAAAGAGTGACCGTGCCGCTGAAGAAGACGAGCGAAAATCACCTCTTATTGATGACGATGAGAGAGAGAAGTACGATAAACTTCTTGCCCTTCCTCCTCATGGTTCGGAAGTATTTATTGGTGGGCTTCCTCGGGATACATGTGATGATGATTTAAGGGAATTGTGTGAGCCAATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGACACCGGAGACAGCAAGGGTTATGCTTTCGTGGCTTTTAAAACGAAGGAGGAGGCACAAAAGGCCATCGATGATATACATAACAAGGAATTTAAGAGCAAAACTTTGAGGTGTTCGCTGTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACATGGACAGAGGATGAGTTTAGGAAAGCCGTTGATGGTGTTGGTCCAGGGGTTGAAAGCATTGACCTCATAAAGGACCCTCAAAATCAAAGCAAAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAATGCTTGTGCTGATTATTCACGTCAAAAGATGTCAAATTCGAGTTTCAAGCTAGATGGAAATACACCAACTGTGACATGGGCAGATCCAAAGACCTCACCTGACAATTCTGCTGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACCGATCAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCGGGAGGGAAACGAGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGACGGCCAAGCTCTTGAAGTTGTTATTGCTAAGCCTCAAGCTGAAAAGAAACCTGATGGAGGCTATGGATACAATCCTGGACTCCATCCTAACCATCTTCCACATCCTGGTTATGGTAACTTTTCTGGAAATCTTTATGGCTCTGTAGGTGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATACGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGCCGAATTGGCTATGTCCTCCAACAACCTGGTGTACAGGTTCCAGCTCCCCGACCCCGCAGAAATGACCGAGGAAATGGTCCAGGTGGTCAGTCAGGGCGTGGAGGAGGTAGTGGTAATGATGAAGGAAATCGTAACAGAAGGTATCGACCCTATTAG 1443 0.4394 MSEGAEIDERVDLDEENYMEEMDDDVEEQLDEDGVDGGEDEIAEGSGEENEYEESAAEVGGKEQFPEGEKSDRAAEEDERKSPLIDDDEREKYDKLLALPPHGSEVFIGGLPRDTCDDDLRELCEPMGDIVEIKLIKDRDTGDSKGYAFVAFKTKEEAQKAIDDIHNKEFKSKTLRCSLSETKHRLFIGNVPKTWTEDEFRKAVDGVGPGVESIDLIKDPQNQSKNRGFAFVLYYNNACADYSRQKMSNSSFKLDGNTPTVTWADPKTSPDNSAASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYGYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQSGRGGGSGNDEGNRNRRYRPY* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0019 480 SUPERFAMILY RNA-binding domain, RBD 184 360 IPR035979 GO:0003676
Psa3g0019 480 CDD RRM3_hnRNPR_like 279 357 - -
Psa3g0019 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 478 - -
Psa3g0019 480 CDD RRM_SF 106 178 - -
Psa3g0019 480 Gene3D - 267 388 IPR012677 -
Psa3g0019 480 MobiDBLite consensus disorder prediction 439 480 - -
Psa3g0019 480 SMART rrm2_1 105 178 IPR003954 GO:0003676
Psa3g0019 480 SMART rrm1_1 281 353 IPR000504 GO:0003723
Psa3g0019 480 SMART rrm1_1 185 262 IPR000504 GO:0003723
Psa3g0019 480 SMART rrm1_1 105 178 IPR000504 GO:0003723
Psa3g0019 480 Gene3D - 185 265 IPR012677 -
Psa3g0019 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
Psa3g0019 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Psa3g0019 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Psa3g0019 480 SUPERFAMILY RNA-binding domain, RBD 100 183 IPR035979 GO:0003676
Psa3g0019 480 MobiDBLite consensus disorder prediction 8 54 - -
Psa3g0019 480 Gene3D - 9 184 IPR012677 -
Psa3g0019 480 PANTHER GEO13361P1-RELATED 2 478 - -
Psa3g0019 480 MobiDBLite consensus disorder prediction 55 91 - -
Psa3g0019 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Psa3g0019 480 MobiDBLite consensus disorder prediction 1 91 - -
Psa3g0019 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Psa3g0019 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0019 Psa-Chr3 6039409 6047935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0019 106 433 Eukaryotic Initiation Factors Gene Family AT1G71770 27.559 3.22e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0019 K13161 - gmx:100790907 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0019 3 6039409 6047935 Psa3g0019 3 6039409 6047935 ECH