Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0017 ATGGATTTATACTCCTCTGGTGAAGAAGTGGTTGTTAAGACAAGAAAACCATATACAATAACAAAACAAAGAGAACGATGGACAGAAGATGAACATAATAGATTTCTAGAAGCCCTGAAGCTATATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAAACTGCTGTGCAAATCAGGAGCCATGCGCAAAAATTCTTTTCAAAGTTGGAGAAGGAAGCTATTGTAAAAGGTTCTGCATTAGGACAAGCTCTTGACTTAGACATCCCCCCTCCCCGGCCCAAAAGAAAACCAAGCAATCCTTACCCTCGCAAGACCAATGCTGGCACCCCAACATCACATAGTGGAGCAAAGTATGGAAAGCCACTTATTGCAGTTGCATCTTCACATGGTAAACAAGCAATGGATTTTGAGACAGAATCGCTTCCAGAGAAGCATAAAGATGAGGAAAGGCCAACAATTGCAAAAGAAAATAATGATGAAAATTGCTCAAAAGTATTTACAATCCTCAAGGAGGCACCTTGTTCATCTGTATCTTCAGCAATCAAGAGTTCAATCTCAATGTCAGTGCCACAAACAAATTGCTGCATCTTAAGGGAGTTTACACCTTCCGTGAAAAATGTAATAACTCAAGATGAAACAAATGAATCTTTTCCTACTACAGAGGTTGAAAATCAGATGTTGGAGTTAGATGATGGTAAACACACACAAAAAACTGATGGCACTTGTAAAACCTCTAAATTGGAGATTTCTCCCAAATCGGTCCAACCTAAGAAATCGGATGATCTTACTTCTGCATTAACAGATGAGATGCAAAGTAATCAGAATTACCCAAGACATATCACTGTGCACGTCGTTGATGGGAACCTTGGAACTAGTACTCAAGACTCCACATTTCAGCCAATAGGAGGAATTAATGGGAAATCTAATCTTTTCACAAATTCAGCTGCATCAAACACAAATGATAGTCAAAATAACATGGCACGGTCATCTATTCCTCAATCATTTCCTCCTTGTCCACCCTTTTCACAACATGGTCATGATGATTACCAATCCTTTCTCAACATGTCTTCTGCATTTTCAAGTCTGATTGTCTCTACCTTGCTGCAACACCCTGCAGCCCATGCTGCAGCAACCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGTAGAATCTTCAGCTGATTCTCCAGCTTGTTCTCAAGGAGGTTTTCCATCTAGACAAATTGGTTCACCTCCGAGTGTAGCAGCTATTGCTGCTGCTACGGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGACTGCTTCCTTTGTGCGCTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCATCAGCAACTGTTGTTCCATCAATGAGTATCAGCGAAGTTCCACCTAAGACAGAACAAGGAGATATTACACTACAAAATCCTCGTCTGCAAGATCATGTACTAGATCCAAAAGACTCAGAAGCTTTGCAAGCTCAACATTCAGCTTCTAAATCACCAGCTGTTTCTTCATCTGAATCAGAGGAGAGTGGAGATGCAAAGTTAAATACTTCATCAAAGGCCACTATGAATCTTGATATAAACCAACCAATTTCTGAGAACCTTAATGCCAACCAAATGGAGGGCAGGAAACTGGTAGACCGGTCTTCCTGTGGTTCCAACACAACCTCTGGCAGTGAAGAGACGGATGCGCTAGAGAAGAATGGGAAAGAAAAGGAAGACCCCAAAATACCTGATGCAGACCATTTAGCTACTGATCCTAGTAGTCGTCGATATAGAAGCATTAGCAACATTCTTGATTCTTGGAAGGAGGTGTCTGAAGAGGGACGACTTGCGTTTCGGGCTCTATTCTCCAGAGAGGTGTTACCCCAAAGCTTTTCACCTCCTCCTGATTTGATAAATAAGGACCATCAGATGGGCAACATGAAGGATAATGAGGAAAAAGCACACCATAAAGATCACCTTGACAGCAAGAAATGCAGTTCTAGTTGTGACCGGTTGCTGCAAAACCTACCATTTGTACAAAATAACAGTGAGGATGAGGGATTGCTAACCTTAGGTCTTGGACAAGGTAAACTTAAGACTCGTCGAACAGGGTTTAAACCTTACAAAAGATGTTTAGTAGAAGCGAAGGAAACCAGAATTGGAACGGCCTGTAATCAAGTTGAAGAGACAGGTCCCAAGAGGATACGCCTGGAAGGGGGGAGTTCTACATGA 2247 0.4241 MDLYSSGEEVVVKTRKPYTITKQRERWTEDEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAIVKGSALGQALDLDIPPPRPKRKPSNPYPRKTNAGTPTSHSGAKYGKPLIAVASSHGKQAMDFETESLPEKHKDEERPTIAKENNDENCSKVFTILKEAPCSSVSSAIKSSISMSVPQTNCCILREFTPSVKNVITQDETNESFPTTEVENQMLELDDGKHTQKTDGTCKTSKLEISPKSVQPKKSDDLTSALTDEMQSNQNYPRHITVHVVDGNLGTSTQDSTFQPIGGINGKSNLFTNSAASNTNDSQNNMARSSIPQSFPPCPPFSQHGHDDYQSFLNMSSAFSSLIVSTLLQHPAAHAAATHAAASFAATFWPYANVESSADSPACSQGGFPSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASATVVPSMSISEVPPKTEQGDITLQNPRLQDHVLDPKDSEALQAQHSASKSPAVSSSESEESGDAKLNTSSKATMNLDINQPISENLNANQMEGRKLVDRSSCGSNTTSGSEETDALEKNGKEKEDPKIPDADHLATDPSSRRYRSISNILDSWKEVSEEGRLAFRALFSREVLPQSFSPPPDLINKDHQMGNMKDNEEKAHHKDHLDSKKCSSSCDRLLQNLPFVQNNSEDEGLLTLGLGQGKLKTRRTGFKPYKRCLVEAKETRIGTACNQVEETGPKRIRLEGGSST* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0017 748 MobiDBLite consensus disorder prediction 139 159 - -
Psa3g0017 748 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Psa3g0017 748 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Psa3g0017 748 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Psa3g0017 748 MobiDBLite consensus disorder prediction 500 525 - -
Psa3g0017 748 MobiDBLite consensus disorder prediction 87 120 - -
Psa3g0017 748 MobiDBLite consensus disorder prediction 554 598 - -
Psa3g0017 748 PANTHER PROTEIN LHY 2 729 - -
Psa3g0017 748 MobiDBLite consensus disorder prediction 132 159 - -
Psa3g0017 748 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Psa3g0017 748 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Psa3g0017 748 MobiDBLite consensus disorder prediction 558 572 - -
Psa3g0017 748 Gene3D - 26 73 - -
Psa3g0017 748 SMART sant 23 71 IPR001005 -
Psa3g0017 748 PANTHER SWI/SNF COMPLEX-RELATED 2 729 - -
Psa3g0017 748 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Psa3g0017 748 MobiDBLite consensus disorder prediction 499 525 - -
Psa3g0017 748 CDD SANT 26 69 IPR001005 -
Psa3g0017 748 MobiDBLite consensus disorder prediction 573 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0017 Psa-Chr3 3609711 3619976 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa3g0017 Myb_DNA-binding 7.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0017 K12133 - gmx:778086 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0017 3 3609711 3619976 Psa3g0017 3 3609711 3619976 ECH