Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0016 ATGGAGGATGCAGCAATTAGGGTTTCATCCCCCTCTTACTGGTTGGATGCTTGCGAAGATATCCCTTGTGATGATTTCATTGATCTCCATGTTTCTTCCATCGTCTCTGAACCCAACCAACTACAACCACAATCCAATCATCAAGATTTTTTCGGTGGTATTGATCGAATCTTGGACAGTATCAAAAACGGTGCTGGCCTCCCTCTTCCCGTCAATCCGCCACCTCAACCACCACCGCTTCTCACTGATGATGATGCTAACCTCTCCAATGTCAATCAAGCTATTGTTACTAATGGTACTGTTGTTGATCAAGATGAAGAAAGGTTCAGCAAAAGAGCTCGTGTTAACGGATGCAACAATGAGAGAAGAATCAATCATCAAACGAACGGGAAGGAGAAATTTGAGAGGTGTTTCAATGGTCGGAAGAGGCCGAGGAGTCAAGATTTCAAGAAAAGGGATAGCTCTTTTAGTGTTAGGAGAGATGTTAGGGGTTATTGGGAGAGGGATAAGTCTACTGGTTCCAATGATTTGGTGTTTCGCTCTGGAACTTGGGAACCTGATCGGGTTCGCCAAGATAAAATGGTTATAGATATCAAACAGGAAACCAGTGATGATAAGAATACTGAGCAGGTTAGTAAGGAGAAGGTTCCTGAGGAAAAAGCAAGACAGTATCAGTTGGATGTTCTAGAGCAGGCAAAGAGTAGAAATACCATAGCTTTTCTAGAAACTGGAGCTGGGAAAACCCTCATTGCCGTTCTTCTCATTAAATCTATACATGAGACTTTGAATCAGCAGAATAAGAAAATGCTTGCAGTGTTTTTGGTTCCTAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGCACTGGATATCAAGTGGGCCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGAGAATTTGACACTAAGCATGTTTTAGTCATGACTGCTCAAATACTTTTGAACATTTTGAGACATAGCATAATAAAAATGGAAGGAATCAATCTCTTGATTCTGGATGAATGCCATCATGCTGTAAAGAAACACCCATATTCCCTGGTGATGTCCGAGTTCTACCATACAACACCCAGAGAAAAGAGGCCATCTGTATTCGGAATGACTGCTTCTCCTGTTAACCTTAAGGGTGTCTCCAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTGGAGAAACATGTGCCTATGCCTTCTGAAATTGTGGTGGAGTATGATAAAGCAGCCAGTCTCTGTTATTTACATGAGCAAATAAAGCAGATGGAGGCTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGACGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTGGGACAGTGGTGTTCATATAAGGTTGCACAGTCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTGTCCCTTCTGAAATGTCAACTGTCAGAGGGTGCCGTTTCCGACAAAAATGATGGAGTAGATGACTCAGGTAATGGTGCTGCTCACAATGGGTCTAATGAACACGAAGAGATTGAAGAAGGAGAGCTTCCGGACAGTCACGTTGTCTCTGGCGGGGAGCATGTGGATGTCATAATAGGTGCTGCTGTGGCGGATGGCAAGGTGACCCCTAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAAAACACAGACGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTCTACCAAAGGTTTTTGCTGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCATGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGTAATGTTGTTATTCGCTTTGATCTCGCAAAGACTGTTCTGGCATACATTCAGTCTAGGGGACGTGCTAGAAAGCCCGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTACCAGGTGAAATCCACTGGTGCAGTAGTTAGCTTAAATTCTGCTGTTGGTCTTGTCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATCATGGAGAAGCATGAAAACTCCGGAGGCCCCACTGAATATTCTTGCAGGCTTCAACTGCCATGTAATGCACCATTTGAAAACCTGGAGGGTCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCGGTTTGTCTAGCTGCTTGCAAAAAATTGCATGAGATGGGAGCATTTACTGACATGTTATTGCCTGATAAAGGAAGTGGGGGAGAAAAAGAAAAGGCTGAGCAAAATGATGAAGGGGATGCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCCGATATTCTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACGACTCCAAATTGCTTCATCTTTATTTGTATACCATAAAGTGCGAGAATGTAGGCCAATCAAAGGATCCGTTCTTGACTCAGGTTTCCGATTTTGCAGTACTTTTTGGCACTGAGCTGGATGCAGAGGTGTTATCGATGTCCATGGATCTATTTATTGCTCGAACCGTGACTACCAAGGCATCTCTTGTCTTTAGAGAGTCAATAGATATCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCAACTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCATTGGTTGGAGATAAGTCTTTAGATCCTATGAACCAATTAGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACTTTAGGTGGTGATAGAAGGGAATACGGATTTGGGAAGTTGCGTCATGGCTTGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTAGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATTCCGTGCAAACAGAAAAGCATATCAACATGACTAGCAAAGGAAAATTGATGATGGCAGATACCTGTACCAATGCAGATGATCTGGTAGGGAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGAAATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAATACAGTTCATATGCTGATTACTACAAGCAAAAATATGGTGTTGATTTGGTTTACAAGCAGCAACCTCTTATACGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAGCACATGAAGGTGAATCTGAAGAGACTCATGACAAAACTTACTATGTTTTCCTTCCTCCCGAGCTATGCTTGGTACACCCACTGCCTGGATCACTCGTTCGTGGTGCTCAGAGGCTGCCTTCAATAATGAGGAGGGTTGAAAGCATGCTGCTTGCTGTTCAGCTTAAGAACATGATAAATTATCCTGTTCAGGCTTCAAAGATCTTGGAGGCCTTGACCGCTGCCTCTTGCCAGGAGACATTTTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCTTATCTGAAATGGGTTGTTAGTCGCTTTCTTTTCCTAAAATATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGTCTTCAATCATATATTCTAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTATTTGATGAGGATACAAAGGATGAGGAGTCATCTTTATTTGACCAAGAGAAGTCCATTTGTAAGATTGAGATGATGGACGTCACTGATGGGTTTGAGGATGAAATGGAAGATGGCGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCCAGCAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGAGTATATTATGTCGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCACATAGAGATCGATCCCGATGAGATGGAGTGTACAACAAAGCCATCCAATGTTCCAGACAGCATACTCAGGAGTGTTGATTTCGATGCTTTAGAAGGTGCTCTAAATCTTAAGTTTAAAGACAAGGGGCTGCTGATAGAAGCCATAACTCATGCTTCAAGACCATCCTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGGGATGCTGTGTTGGACCATCTTATAACCAGGCACTTATTTTTCTCGTACACAGATCTGCCACCAGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTACAGTTAAACACAATCTTCACCTGCATTTACGACATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGAAGAATTGTTAAAACCAGGGTTTAACTCGTTTGGTCTTGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATCCTTGAATCTATTGCCGGTGCTATTTTTCTTGACAGTGGGAAGAATACTGCTGTCGTTTGGGAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACACCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGTTTGGAGTACAGAGCTAGTCGTGCTGGCAATTTGGCGACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGGACTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCAGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGGCAAAATTCAGGAGAAAAATGATGAAAACGGGACAAAGAATGGGAACCAGACATTTACTAGACAAACATTAAATGACATCTGTTTGCGAAGAAACTGGCCTATGCCATTCTACCGGTGTGTGAGTGAGGGTGGTCCTGCGCATGCAAAGAGGTTTACATTTGCGGTGCGTGTGAATACTACTGATAAAGGTTGGACAGGTGAGTGTGTTGGAGAGCCAATGCCAAGTGTCAAGAAGGCCAAAGACTCGGCTGCTGTTCTTCTCTTAGAACTAATAAACAAATTATACTCGTGA 5643 0.4343 MEDAAIRVSSPSYWLDACEDIPCDDFIDLHVSSIVSEPNQLQPQSNHQDFFGGIDRILDSIKNGAGLPLPVNPPPQPPPLLTDDDANLSNVNQAIVTNGTVVDQDEERFSKRARVNGCNNERRINHQTNGKEKFERCFNGRKRPRSQDFKKRDSSFSVRRDVRGYWERDKSTGSNDLVFRSGTWEPDRVRQDKMVIDIKQETSDDKNTEQVSKEKVPEEKARQYQLDVLEQAKSRNTIAFLETGAGKTLIAVLLIKSIHETLNQQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEGINLLILDECHHAVKKHPYSLVMSEFYHTTPREKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCSYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNDGVDDSGNGAAHNGSNEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNDSKLLHLYLYTIKCENVGQSKDPFLTQVSDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRESIDITESQLASLKSFHVRLMSIVLDVDVEPTTTPWDPAKAYLFVPLVGDKSLDPMNQLDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSVQTEKHINMTSKGKLMMADTCTNADDLVGRIVTAAHSGKRFYVDSIRYEMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEESSLFDQEKSICKIEMMDVTDGFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECTTKPSNVPDSILRSVDFDALEGALNLKFKDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKEFVKEVQEELLKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGKNTAVVWEVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGTAQNPQKKMAQKLAARNALAALKEKEVGKIQEKNDENGTKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTGECVGEPMPSVKKAKDSAAVLLLELINKLYS* 1881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0016 1880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 756 IPR027417 -
Psa3g0016 1880 Pfam PAZ domain 1182 1320 IPR003100 GO:0005515
Psa3g0016 1880 SMART helicmild6 658 744 IPR001650 -
Psa3g0016 1880 CDD DEXHc_dicer 220 419 - -
Psa3g0016 1880 MobiDBLite consensus disorder prediction 908 927 - -
Psa3g0016 1880 Pfam Type III restriction enzyme, res subunit 230 387 IPR006935 GO:0003677|GO:0005524|GO:0016787
Psa3g0016 1880 Gene3D Dicer dimerisation domain 812 914 IPR038248 -
Psa3g0016 1880 MobiDBLite consensus disorder prediction 199 218 - -
Psa3g0016 1880 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1717 1780 IPR014720 -
Psa3g0016 1880 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1802 1877 IPR014720 -
Psa3g0016 1880 Gene3D - 1715 1791 - -
Psa3g0016 1880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 355 IPR027417 -
Psa3g0016 1880 SUPERFAMILY dsRNA-binding domain-like 1806 1875 - -
Psa3g0016 1880 ProSiteProfiles PAZ domain profile. 1160 1300 IPR003100 GO:0005515
Psa3g0016 1880 Pfam Helicase conserved C-terminal domain 625 742 IPR001650 -
Psa3g0016 1880 Gene3D - 615 781 IPR027417 -
Psa3g0016 1880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 405 IPR014001 -
Psa3g0016 1880 SMART ultradead3 217 420 IPR014001 -
Psa3g0016 1880 Pfam Ribonuclease III domain 1578 1691 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 Pfam Ribonuclease III domain 1357 1502 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1802 1873 - -
Psa3g0016 1880 CDD RIBOc 1559 1714 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 Gene3D Ribonuclease III domain 1321 1517 IPR036389 GO:0004525|GO:0006396
Psa3g0016 1880 Gene3D Ribonuclease III domain 1538 1712 IPR036389 GO:0004525|GO:0006396
Psa3g0016 1880 ProSiteProfiles Ribonuclease III family domain profile. 1543 1691 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 SUPERFAMILY RNase III domain-like 1536 1710 IPR036389 GO:0004525|GO:0006396
Psa3g0016 1880 Pfam Dicer dimerisation domain 817 905 - -
Psa3g0016 1880 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 185 1878 - -
Psa3g0016 1880 Gene3D - 1808 1877 - -
Psa3g0016 1880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 789 IPR001650 -
Psa3g0016 1880 CDD SF2_C_dicer 622 752 - -
Psa3g0016 1880 Gene3D paz domain 1178 1298 - -
Psa3g0016 1880 SMART DRBM_3 1718 1779 IPR014720 -
Psa3g0016 1880 SMART DRBM_3 1803 1876 IPR014720 -
Psa3g0016 1880 SMART PAZ_2_a_3 1162 1324 IPR003100 GO:0005515
Psa3g0016 1880 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 817 912 IPR005034 GO:0016891
Psa3g0016 1880 SUPERFAMILY PAZ domain 1180 1300 IPR036085 GO:0005515
Psa3g0016 1880 ProSiteProfiles Ribonuclease III family domain profile. 1343 1502 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 ProSitePatterns Ribonuclease III family signature. 1578 1586 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 SMART riboneu5 1558 1714 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 SMART riboneu5 1339 1521 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 CDD RIBOc 1339 1518 IPR000999 GO:0004525|GO:0006396
Psa3g0016 1880 PANTHER DICER-RELATED 185 1878 - -
Psa3g0016 1880 CDD DSRM_DCL_plant 1808 1877 - -
Psa3g0016 1880 Gene3D - 215 459 IPR027417 -
Psa3g0016 1880 SUPERFAMILY dsRNA-binding domain-like 1673 1797 - -
Psa3g0016 1880 SUPERFAMILY RNase III domain-like 1316 1520 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0016 Psa-Chr3 3554569 3564784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0016 641 784 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 6.18e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0016 K11592 - gmx:100811631 3242.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0016 3 3554569 3564784 Psa3g0016 3 3554569 3564784 ECH