Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0012 ATGATGAGCAGCAGCAACCACAACAATGGATCACAGTTTGGGGACACTACGCTGACCAAAGTGTTCGTCGGAGGTCTTGCCTGGGAGACTCCGAAAGACACACTCAGGGAACATTTTCAAAAGTACGGTGAAATCCTTGAAGCTGTTATCATTTCTGATAAGGTTACCGGCAGATCCAAAGGCTACGGATTTGTAACGTTCAAGGAAGCAGAGGCGGCAAACAAGGCTTGCGAGGAACCGACCGTCATGATCAATGGCCGCCGAGCCAACTGCAATATCGCATCTCATGGTGCTCGCCGTCAAAGGTCTGCTCCCGCCACTCCTCCTCTTTCTCCTCCACCTGTTCCTCCTCCATACACCCCAGGAACGAAGAACTGTGAGAACCAGCAGGTTCAGTGGTATTATCCGGTGGGAACACCCACACCTGCACCTCCTTCTCCATTCCATCATCACGCCATTCCTTTTTACGGGTATACACCCACCACCTACATTGCACCAGATCATATGAATTACAATTATTATAACTACAATTACAATTACAATCACAATCAGAAGGTGAACTATGGAATGGGTGGGATGTATGTGTACCCGGCTCGGCAGGGTGTTGTGCCAGTGATGCATCCGTTCTACAGAACCGAAGCTATGGGTGTCCCTGCACCTCAAATCTTCCATCCACTACCACCTCATTATTCCCCCTCCATCACTCCTACTACTGCTACTATTACAGGTCCAGTTGGCACTGGTGAATGCTTCAAAAGAGTAGTGGTATGA 771 0.4903 MMSSSNHNNGSQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGEILEAVIISDKVTGRSKGYGFVTFKEAEAANKACEEPTVMINGRRANCNIASHGARRQRSAPATPPLSPPPVPPPYTPGTKNCENQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTYIAPDHMNYNYYNYNYNYNHNQKVNYGMGGMYVYPARQGVVPVMHPFYRTEAMGVPAPQIFHPLPPHYSPSITPTTATITGPVGTGECFKRVVV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0012 256 PANTHER GEO13361P1-RELATED 5 228 - -
Psa3g0012 256 CDD RRM_RBM24_RBM38_like 19 94 - -
Psa3g0012 256 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 5 228 - -
Psa3g0012 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 108 IPR000504 GO:0003723
Psa3g0012 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Psa3g0012 256 Gene3D - 2 106 IPR012677 -
Psa3g0012 256 SMART rrm1_1 20 92 IPR000504 GO:0003723
Psa3g0012 256 SUPERFAMILY RNA-binding domain, RBD 15 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0012 Psa-Chr3 1759672 1761840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0012 15 95 C2H2 Transcription Factor Family AT2G19380 41.975 9.89e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0012 - - mtr:MTR_7g117495 283.493